| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,743,502 – 2,743,596 |
| Length | 94 |
| Max. P | 0.606615 |
| Location | 2,743,502 – 2,743,596 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 91.61 |
| Shannon entropy | 0.17460 |
| G+C content | 0.49268 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -20.19 |
| Energy contribution | -20.38 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2743502 94 + 27905053 UGACAGGCUCAGUGACUUCGGGA--CCCGG-------GAACC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((..--...(.-------...).--..))))))..))))......)))-))))(((((((........))))).))........... ( -27.00, z-score = -1.94, R) >droPer1.super_3 5007719 98 - 7375914 UGACAGGCUCAGUGACUUCGGGAGACCCGG-------GGACUGAAACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCACCAAAAGAGAUAC .(((((((((((..(.(((((....)).(.-------...).......))))..))))......)))-))))..(((((........))))).............. ( -28.00, z-score = -1.86, R) >dp4.chr2 11170417 97 - 30794189 UGACAGGCUCAGUGACUUCGGGAGACCCGG-------GGACC-AAACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCACCAAAAGAGAUAC .(((((((((((..(.(((((....)).(.-------...).-.....))))..))))......)))-))))..(((((........))))).............. ( -27.60, z-score = -1.80, R) >droAna3.scaffold_13340 18383949 93 - 23697760 UGACAGGCUCAGUGACUUCGGGA--CCC-G-------AGAGC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((..--..(-.-------...).--..))))))..))))......)))-))))(((((((........))))).))........... ( -27.90, z-score = -2.37, R) >droEre2.scaffold_4770 2994847 101 + 17746568 UGACAGGCUCAGUGACUUCGGGA--CCCGGGACCCGGCAACC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((..--.((((...)))).....--..))))))..))))......)))-))))(((((((........))))).))........... ( -30.80, z-score = -2.11, R) >droYak2.chr3R 21164356 94 - 28832112 UGACAGGCUCAGUGACUUCGGGA--CCCGG-------CAACC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((..--...(.-------...).--..))))))..))))......)))-))))(((((((........))))).))........... ( -28.00, z-score = -2.40, R) >droSec1.super_6 2834951 94 + 4358794 UGACAGGCUCAGUGACUUCGGGA--CCCGG-------GAACC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((..--...(.-------...).--..))))))..))))......)))-))))(((((((........))))).))........... ( -27.00, z-score = -1.94, R) >droSim1.chr3R 2780141 94 + 27517382 UGACAGGCUCAGUGACUUCGGGA--CCCGG-------GAACC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((..--...(.-------...).--..))))))..))))......)))-))))(((((((........))))).))........... ( -27.00, z-score = -1.94, R) >droVir3.scaffold_13047 13253593 92 - 19223366 UGACAGGCUCAGUGACUUCGGGA--CCCGG----------CC-AAACAGAAUUGCUGACUAACAGCCCUGUCGCGAAAUAUGAGUCCAUUUCAGCGUAAGAUACA- (((..((((((...(.((((.((--(..((----------(.-...(((.....))).......)))..))).)))).).))))))....)))............- ( -21.10, z-score = 0.10, R) >droGri2.scaffold_14906 2853995 88 - 14172833 UGACAGGCUCAGUGACUUCGGGA--CCCCG----------CC-AAACUGAAUUGCUGACUAACAGCCCUGUCGCGAAAUAUGAGUCCAUUUCAGCAUAAGA----- .((((((.(((((.....(((..--..)))----------..-..)))))...((((.....))))))))))(((((((........))))).))......----- ( -27.50, z-score = -2.79, R) >droWil1.scaffold_181089 12143037 94 + 12369635 UGACAGGCUCAGUGACUUUGGGA--CCCCG-------AGACC--AACUGAAUUGCUGACUAACAGCC-UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .((((((((((((...(((((..--..)))-------))...--.)))))..((........)))))-))))(((((((........))))).))........... ( -26.20, z-score = -2.40, R) >consensus UGACAGGCUCAGUGACUUCGGGA__CCCGG_______GAACC__AACUGAAUUGCUGACUAACAGCC_UGUCGCGAAAUAUGAGUCCAUUUCAGCAAAAGAGAUAC .(((((((((((..(.(((((.........................))))))..))))......))).))))(((((((........))))).))........... (-20.19 = -20.38 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:57 2011