| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,732,817 – 2,732,923 |
| Length | 106 |
| Max. P | 0.660494 |
| Location | 2,732,817 – 2,732,923 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.39 |
| Shannon entropy | 0.15279 |
| G+C content | 0.42787 |
| Mean single sequence MFE | -24.84 |
| Consensus MFE | -22.27 |
| Energy contribution | -22.36 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2732817 106 - 27905053 --UUCGCCAAAGCCAGAUUGAGAUGUAAAGCACAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ --(((((....))......(((((.........((((((((.((((((((.((.(((.....)))))))))).))))))))))).....)))))..))).........------------ ( -21.94, z-score = -0.79, R) >droSim1.chr3R 2769534 106 - 27517382 --UUCGCCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ --(((((....)).(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))...))).........------------ ( -24.10, z-score = -1.53, R) >droSec1.super_6 2824376 106 - 4358794 --UUCGCCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ --(((((....)).(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))...))).........------------ ( -24.10, z-score = -1.53, R) >droYak2.chr3R 21153701 106 + 28832112 --UUCGCCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ --(((((....)).(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))...))).........------------ ( -24.10, z-score = -1.53, R) >droEre2.scaffold_4770 2984249 106 - 17746568 --UUCGCCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ --(((((....)).(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))...))).........------------ ( -24.10, z-score = -1.53, R) >droAna3.scaffold_13340 18374254 107 + 23697760 -UUUCGCCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ -.(((((....)).(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))...))).........------------ ( -24.30, z-score = -1.63, R) >dp4.chr2 11158733 119 + 30794189 -UUGCACCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAGUCGAGACUCCAG -..((.........(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).))))))).........)).((((....))))... ( -27.47, z-score = -1.59, R) >droPer1.super_3 4996080 120 + 7375914 UUUGCACCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAGUCGAGACUCCAG ...((.........(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).))))))).........)).((((....))))... ( -27.47, z-score = -1.54, R) >droWil1.scaffold_181089 12131083 105 - 12369635 ---GCACCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGACCGUCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG------------ ---((.........(((((((..((.....))(((((((((..((((....(((.(((.....))).))).)))).))))))))).))))))).........))....------------ ( -19.07, z-score = -0.24, R) >droVir3.scaffold_13047 13241659 106 + 19223366 --UCUGCCUUAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGCG------------ --(((((....).))))..(((((........(((((((((.((((((((.((.(((.....)))))))))).))))))))))))....)))))..............------------ ( -24.60, z-score = -1.00, R) >droMoj3.scaffold_6540 17767766 106 + 34148556 --GCUGCCUUGGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCUGUG------------ --((((..((((..(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))))))..)).))....------------ ( -29.70, z-score = -1.72, R) >droGri2.scaffold_14906 2842547 106 + 14172833 --GCUGCUUUAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGCG------------ --((.((.......(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).))))))).........)).)).------------ ( -27.09, z-score = -1.44, R) >consensus __UUCGCCAAAGCCAGAUUGAGAUGUAAAGCAGAAUUGAUGAGCGCCAUUAGUUACACGUUAUGUGCAAUGGAUGCCAUCAAUUUAUUAAUCUCCAGAACACGCCGAG____________ ..............(((((((..((.....))(((((((((.((((((((.((.(((.....)))))))))).)))))))))))).)))))))........................... (-22.27 = -22.36 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:53 2011