Locus 8927

Sequence ID dm3.chr3R
Location 2,717,882 – 2,717,976
Length 94
Max. P 0.917188
window12257 window12258

overview

Window 7

Location 2,717,882 – 2,717,976
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 97.52
Shannon entropy 0.04841
G+C content 0.45390
Mean single sequence MFE -25.13
Consensus MFE -22.82
Energy contribution -23.35
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.26
SVM RNA-class probability 0.917188
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 2717882 94 + 27905053
UUACUUACAUCUGCAGCUCAAUUUUCAGUUCGGCUUCUGGAGAGUCGAGUAUCUCGUUCUCCCGCUUUUUGUCGCUGGCCUUUCUUAUGGCCAA
......(((...((((((.(((.....))).))))...((((((.((((...)))))))))).))....)))...(((((........))))). ( -26.40, z-score =  -2.52, R)
>droSim1.chr3R 2753974 94 + 27517382
UUACUUACAUCUGCAGCUCAAUUUUCAGUUUGGCUUCUGGAGAGUCGAGUAUCUCGUUCUCCCGCUUUUUGUCGCUGGCCUUUCUUAUGGCCAA
......(((...(((((.(((........))))))...((((((.((((...)))))))))).))....)))...(((((........))))). ( -26.70, z-score =  -2.59, R)
>droSec1.super_6 2809475 94 + 4358794
UUACUUACAUCUGCAGCUCAAUUUUCAGUUUGGCUUCUGGAGAGUCGAGUAUCUCGUUCUCCCGCUUUUUGUCGCUGGCCUUUCUUAUGGCCAA
......(((...(((((.(((........))))))...((((((.((((...)))))))))).))....)))...(((((........))))). ( -26.70, z-score =  -2.59, R)
>droYak2.chr3R 21138615 94 - 28832112
UUACUUACAUCUGCAGCUCAAUUUUCAGUUUGGCUUCUGGAGAGUCGAGUAUCUCGUUCUCCCGCUUUUUGUCGCUGGCCUUUCUUAUGGCCAA
......(((...(((((.(((........))))))...((((((.((((...)))))))))).))....)))...(((((........))))). ( -26.70, z-score =  -2.59, R)
>droEre2.scaffold_4770 2969018 94 + 17746568
UUACUUACAUCUGCAGCUCAAUUUUCAGUUUGGCUUCUGGAGAGUCGAGUAUCUCGUUCUACCGCUUUUCGUCGCUGGCCUUUCUUAUGGCCAA
............(((((.(((........))))))...((((((.((((...)))))))).))))..........(((((........))))). ( -22.90, z-score =  -1.26, R)
>droAna3.scaffold_13340 18360028 94 - 23697760
UUACUUACAUCUGCAGCUCAAUUUUCAGUUUGACUUCUGGUGAGUCGAGUAUCUCGUUUUCCAGCUUUUUGUCGCUGGCCUUUCUUAUGGCCAA
............((((((........)))).(((..((((.(((.((((...))))))).))))......)))))(((((........))))). ( -21.40, z-score =  -1.37, R)
>consensus
UUACUUACAUCUGCAGCUCAAUUUUCAGUUUGGCUUCUGGAGAGUCGAGUAUCUCGUUCUCCCGCUUUUUGUCGCUGGCCUUUCUUAUGGCCAA
......(((...((((((.(((.....))).))))...((((((.((((...)))))))))).))....)))...(((((........))))). (-22.82 = -23.35 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 2,717,882 – 2,717,976
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 97.52
Shannon entropy 0.04841
G+C content 0.45390
Mean single sequence MFE -22.82
Consensus MFE -21.39
Energy contribution -21.62
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.79
SVM RNA-class probability 0.818105
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 2717882 94 - 27905053
UUGGCCAUAAGAAAGGCCAGCGACAAAAAGCGGGAGAACGAGAUACUCGACUCUCCAGAAGCCGAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........)))))).........((.(((((.((((...))))..)))))...((((((........))).)))))............ ( -24.00, z-score =  -1.79, R)
>droSim1.chr3R 2753974 94 - 27517382
UUGGCCAUAAGAAAGGCCAGCGACAAAAAGCGGGAGAACGAGAUACUCGACUCUCCAGAAGCCAAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........)))))).........((.(((((.((((...))))..)))))...((((((........))).)))))............ ( -24.30, z-score =  -2.06, R)
>droSec1.super_6 2809475 94 - 4358794
UUGGCCAUAAGAAAGGCCAGCGACAAAAAGCGGGAGAACGAGAUACUCGACUCUCCAGAAGCCAAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........)))))).........((.(((((.((((...))))..)))))...((((((........))).)))))............ ( -24.30, z-score =  -2.06, R)
>droYak2.chr3R 21138615 94 + 28832112
UUGGCCAUAAGAAAGGCCAGCGACAAAAAGCGGGAGAACGAGAUACUCGACUCUCCAGAAGCCAAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........)))))).........((.(((((.((((...))))..)))))...((((((........))).)))))............ ( -24.30, z-score =  -2.06, R)
>droEre2.scaffold_4770 2969018 94 - 17746568
UUGGCCAUAAGAAAGGCCAGCGACGAAAAGCGGUAGAACGAGAUACUCGACUCUCCAGAAGCCAAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........)))))).........((((.(((.((((...))))..)))))...((((((........))).)))))............ ( -20.80, z-score =  -0.89, R)
>droAna3.scaffold_13340 18360028 94 + 23697760
UUGGCCAUAAGAAAGGCCAGCGACAAAAAGCUGGAAAACGAGAUACUCGACUCACCAGAAGUCAAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........))))))..(((...((((.((....(((...)))(((((....).))))..........)).)))).....)))...... ( -19.20, z-score =  -1.01, R)
>consensus
UUGGCCAUAAGAAAGGCCAGCGACAAAAAGCGGGAGAACGAGAUACUCGACUCUCCAGAAGCCAAACUGAAAAUUGAGCUGCAGAUGUAAGUAA
((((((........)))))).........((.(((((.((((...))))..)))))...((((((........))).)))))............ (-21.39 = -21.62 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:52 2011