| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,715,409 – 2,715,502 |
| Length | 93 |
| Max. P | 0.991843 |
| Location | 2,715,409 – 2,715,502 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.70 |
| Shannon entropy | 0.45943 |
| G+C content | 0.53306 |
| Mean single sequence MFE | -38.60 |
| Consensus MFE | -19.68 |
| Energy contribution | -19.82 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.50 |
| SVM RNA-class probability | 0.991843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2715409 93 - 27905053 -----------------CUUCCGUGGGCGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU -----------------...((((((.(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))-----))))))))))).. ( -42.80, z-score = -4.84, R) >droMoj3.scaffold_6540 17747445 108 + 34148556 UGGGGAUGGGUGAGAGGCAUGAGUGCGGGGG-CUUGUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUG------CUCCGUUACGGUU .((((...(((((.((((.((....))...)-))).))))).((((((((((((.((((.((....)).)))).))....))))))))))......------))))......... ( -36.30, z-score = -0.92, R) >droGri2.scaffold_14906 2823117 108 + 14172833 -GGGAGGGGACGGAGGCGGUGGCGGGGGGAGUCUUGUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUG------CUCCGUUACGGUU -.....(..((((((((((((((((((....)))))))))).((((((((((((.((((.((....)).)))).))....))))))))))))....------))))))..).... ( -42.60, z-score = -2.65, R) >droVir3.scaffold_13047 13221870 108 + 19223366 UUGGAAUGGAGUGCGGAUGCGGGUGUGGGAG-CUUGUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUG------CUCCGUUACGGUU (((.((((((((((((..((((((......)-)))))..)).((((((((((((.((((.((....)).)))).))....))))))))))))...)------))))))).))).. ( -37.30, z-score = -1.32, R) >droWil1.scaffold_181089 12110780 110 - 12369635 -----UUGAGAAAAUAGUGGGGGGAGGGGCUGCGGAGAGGGGAUAUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCUUCUGCUUCGUUACGGUU -----...........(((((((.((((((.((.(((((.(((.(((.....))).))).)))))..........((((.((...)).)))))).)))))).))))..))).... ( -27.30, z-score = 0.08, R) >droPer1.super_3 4976646 97 + 7375914 ------------GCGGGAGCGGGAGUGGGAG-UGUAUUGCCGCCGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU ------------((((..((((.((((....-..)))).))(((((((((((((.((((.((....)).)))).))....))))))))).))...))-----..))))....... ( -36.00, z-score = -1.19, R) >dp4.chr2 11138412 97 + 30794189 ------------GUGGGAGCGGGAGUGGGAG-UGUAUUGCCGCCGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU ------------((((..((((.((((....-..)))).))(((((((((((((.((((.((....)).)))).))....))))))))).))...))-----..))))....... ( -34.10, z-score = -0.92, R) >droEre2.scaffold_4770 2966458 93 - 17746568 -----------------CUUCCGUGGACGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU -----------------...((((((.(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))-----))))))))))).. ( -42.80, z-score = -5.27, R) >droYak2.chr3R 21136079 95 + 28832112 ---------------CUCCGCCGUGGGCGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU ---------------....(((((((.(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))-----)))))))))))). ( -44.50, z-score = -4.60, R) >droSec1.super_6 2806930 88 - 4358794 ----------------------GUGGGCGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU ----------------------((((.(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))-----))))))))).... ( -38.10, z-score = -3.78, R) >droSim1.chr3R 2751416 93 - 27517382 -----------------CUUCCGUGGGCGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC-----CUCCGCUACGGUU -----------------...((((((.(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))-----))))))))))).. ( -42.80, z-score = -4.84, R) >consensus _______________G_CGUGGGUGGGGGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGC_____CUCCGCUACGGUU ......................................(((.((((((((((((.((((.((....)).)))).))....))))))))))(((..(......)..)))...))). (-19.68 = -19.82 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:51 2011