| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,715,239 – 2,715,343 |
| Length | 104 |
| Max. P | 0.657084 |
| Location | 2,715,239 – 2,715,343 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 94.04 |
| Shannon entropy | 0.10437 |
| G+C content | 0.52515 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -20.16 |
| Energy contribution | -20.04 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2715239 104 + 27905053 GAGCUGGCGAAUAAUAUAUGAGUGCACUCACUCAAACUGACUAAAUUCCCUGUCCCACUCGCCUGGUUUUCUUCAGGUUCCCCGCCCUAACAUCACAGCCCCAC ..(((((((.........((((((....))))))....(((..........)))......((((((......))))))....))))..........)))..... ( -21.00, z-score = -1.33, R) >droEre2.scaffold_4770 2966285 102 + 17746568 GAGCUGGCGAAUAAUAUAUGAGAGCACUCACUCAAACUGACUAAAUUCCCUGUCCCACUCGCCGGGUUU-CUUCGGGUUCCCCGCCCUAACA-CACAGCCCCAC ..((((((((........((((........))))....(((..........)))....)))))(((..(-(....))..)))..........-...)))..... ( -23.40, z-score = -1.00, R) >droYak2.chr3R 21135893 104 - 28832112 GAGCUGGCAAAUAAUAUAUGAGUGCACUCACUCAAACUGACUAAAUUCCCUGUCCCACUCGCCUGGUUUUCUUCGGGCUCCCCGCCCCAACAUCACUGCCCCAC (((.(((...........((((((....))))))....(((..........)))))))))((((((......)))))).......................... ( -22.30, z-score = -1.73, R) >droSec1.super_6 2806750 104 + 4358794 GAGCUGGCGAAUAAUAUAUGAGUGCACUCACUCAAACUGACUAAAUUCCCUGUCCCACUCGCCUGGUUCUCUCCAGGUUCCCCGCCCUGACAUCACAGUCCAAC ((((((((((........((((((....))))))....(((..........)))....))))).)))))....((((........))))............... ( -25.30, z-score = -2.24, R) >droSim1.chr3R 2751241 104 + 27517382 GAGCUGGCGAAUAAUAUAUGAGUGCACUCACUCAAACUGACUAAAUUCCCUGUCCCACUCGCCUGGUUUUCUCCAGGUUCCCCGCCCUGACAUCACAGCCCCAC (((.(((...........((((((....))))))....(((..........)))))))))((((((......)))))).....((..((....))..))..... ( -24.20, z-score = -1.98, R) >consensus GAGCUGGCGAAUAAUAUAUGAGUGCACUCACUCAAACUGACUAAAUUCCCUGUCCCACUCGCCUGGUUUUCUUCAGGUUCCCCGCCCUAACAUCACAGCCCCAC (((.(((...........((((((....))))))....(((..........)))))))))((((((......)))))).......................... (-20.16 = -20.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:50 2011