| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,708,926 – 2,709,030 |
| Length | 104 |
| Max. P | 0.705536 |
| Location | 2,708,926 – 2,709,030 |
|---|---|
| Length | 104 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 61.89 |
| Shannon entropy | 0.77015 |
| G+C content | 0.53758 |
| Mean single sequence MFE | -33.21 |
| Consensus MFE | -10.21 |
| Energy contribution | -10.20 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2708926 104 - 27905053 AAUUUCCGAUGCGACCGACUGCCCACGGAUCGAAACGGAUCCUU---------------GGAGUGGGUCUGAACCGAACUGGAACCGUAUUUACUGGGCUGGACGUGCGUUUAGCACAU .....(((((((((((.(((..(((.(((((......))))).)---------------))))).))))....((.....))....)))))....))(((((((....))))))).... ( -34.00, z-score = -1.41, R) >droEre2.scaffold_4770 2960099 104 - 17746568 AAUUUCCGAUGCGACCGACUGCCCACGGAUCGAAACGGAUCCUU---------------GGAAUGGGUCUGAACCGGACUGGAACCGUAUUUCCUGGGCUGGACGUGCGUUUAGCACAU ..............(((...(((((.(((.....((((.(((..---------------......((((((...))))))))).))))...)))))))))))..((((.....)))).. ( -32.80, z-score = -0.65, R) >droYak2.chr3R 21129913 104 + 28832112 AAUUUCAGUUGCGUCCGACUGCUCACGGAUCGAAACGGAUCCUU---------------GGAAUGGGUCUGAAGCGGACUGGAACCGUAUUUCCUGGGCUGGACGUGCGUUUAGCACAU ............(((((...(((((.(((......(((((((..---------------.....)))))))..((((.......))))...)))))))))))))((((.....)))).. ( -36.40, z-score = -1.60, R) >droSec1.super_6 2800611 104 - 4358794 AAUUUCCGAUGCGACCGACUGCCCACGGAUCGAAACGGAUCCUU---------------GCAGUGGGUCUGAACCGGACUGGAACCGUAUUUCCUGGGCUGGACGUGCGUUUAGCACAU ....((((...(((((.(((((....(((((......)))))..---------------))))).)))).)...))))((((((......)))).))(((((((....))))))).... ( -38.60, z-score = -2.16, R) >droSim1.chr3R 2745010 104 - 27517382 AAUUUCCGAUGCGACCGACUGCCCACGGAUCGAAACGGAUCCUU---------------GGAGUGGGUCUGAACCGGACUGGAACCGUAUUUCCUGGGCUGGACGUGCGUUUAGCACAU ....((((...(((((.(((..(((.(((((......))))).)---------------))))).)))).)...))))((((((......)))).))(((((((....))))))).... ( -37.10, z-score = -1.55, R) >droAna3.scaffold_13340 18350646 97 + 23697760 AAUUUCCGCUCCGACUGACUGGCCAGAGAUC-------UCUUCU---------------GGAACCGUUCCGUUCCGUUCCAUUCGAUUCCUUCUGGGGCUGGACGUGCGUUUAGCACAU ....(((((((((((.((.(((((((((...-------..))))---------------))..))).)).))).((.......)).........))))).))).((((.....)))).. ( -28.60, z-score = -0.85, R) >droWil1.scaffold_181089 264409 80 + 12369635 AAUUUCCUCCUCAACU-UCUCCUCCUGGA----AAGGAGAACUG---------------AGAAUGGG-------AGGACGGGA------------GGGCUGGACAUGCGUUUAGCACAU ..((((((((((...(-(((((((((...----.)))))....)---------------))))...)-------)))).))))------------).(((((((....))))))).... ( -33.70, z-score = -3.38, R) >droVir3.scaffold_13047 13213453 104 + 19223366 AAUUUUCCCUAUAACAUGCAGGACAGCAGCACAAACGUCCAAUGCCCG--------------UUGCCCUGUGUCCAUUCCCAGAGCCUGUUUC-UGGGCUGGACGCGCGUUUAGCACAU ........(((....(((((((.((((.(((...........)))..)--------------))).)))(((((((..(((((((.....)))-)))).))))))))))).)))..... ( -32.70, z-score = -2.04, R) >droMoj3.scaffold_6540 17738940 118 + 34148556 AAUUUUCUCAAUAACAUGCAGGACAGCAGCCCAAAAGUCCGAUGCCCGCAGUCCCCUGCCGCCUGCCCUUUGUCCAAUCGCAAAGCCUGUUUC-UGGGCUGGACGUGCGUUUAGCACAU ................(((......)))........(((((..((((((((....))))........((((((......))))))........-.)))))))))((((.....)))).. ( -31.50, z-score = -0.27, R) >droGri2.scaffold_14906 2816181 99 + 14172833 AAUUUCCCC--UAACAUGCAGGACAGUAACCCAAAAGUCCAAAA------------------UUCCCCGCUGUCCGUUGGCAGGGUCGGUUCCUUGGGCUGGACGCACGUUUAGCACAU ((((..(((--(..((....(((((((.................------------------......)))))))..))..))))..))))...((.(((((((....))))))).)). ( -26.70, z-score = -0.04, R) >consensus AAUUUCCGCUGCGACCGACUGCCCACGGAUCGAAACGGAUCCUU_______________GGAAUGGGUCUGAACCGGACUGGAACCGUAUUUCCUGGGCUGGACGUGCGUUUAGCACAU ....................((((((....................................)))))).............................(((((((....))))))).... (-10.21 = -10.20 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:49 2011