| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,687,256 – 2,687,365 |
| Length | 109 |
| Max. P | 0.510472 |
| Location | 2,687,256 – 2,687,365 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.45100 |
| G+C content | 0.43034 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -14.71 |
| Energy contribution | -14.60 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2687256 109 - 27905053 -UUUUCCCGGAGCAGCGUUAUCAGCUGCCGUGGGUCAAGCGAAUCCAAAGUGACCAAGAUCAUUAGGAAACUAAACUGUCAUUUCUUGCCAAAAAGUUGUAUGCUAUUAU- -....((((..(((((.......)))))..))))...((((......(((((((..((....((((....)))).)))))))))(((......))).....)))).....- ( -26.30, z-score = -1.11, R) >droSim1.chr3R 2721839 109 - 27517382 -UUUCCCCGGAGCAGCGUUAUCAGCUGCCGUGGGUCAAGCGAAUCCAAAGUGACCAAGAUCAUUAGGAACCUAAGCUGUCAUUUCUUGCCAAAAAGUUGUAUACUAUUAU- -....((((..(((((.......)))))..))))....((((.....(((((((..((....((((....)))).))))))))).)))).....................- ( -24.90, z-score = -0.72, R) >droSec1.super_6 2778553 109 - 4358794 -UUUUCCCGGAGCAGCGUUAUCAGCUGCCGUGGGUCAAGCGAAUCCAAAGUGACCAAGAUCAUUAGGAAACUAAGCUGUCAUUUCUUGCCAAAAAGUUGUAUACUAUUAU- -....((((..(((((.......)))))..))))....((((.....(((((((..((....((((....)))).))))))))).)))).....................- ( -27.20, z-score = -1.49, R) >droYak2.chr3R 21106968 100 + 28832112 UUUCCACCGAAGCAGCAUUAUCAGCUGCCGCGGGCCAAGCGAUUCCAAAGUGACCAACAUCAUUAGGAA-CUAAAC----------UGCCAGAAAGUGGUAUACUAUUAUC ...((((((..(((((.......)))))..))(((.......((((..(((((......))))).))))-......----------.))).....))))............ ( -24.04, z-score = -1.59, R) >droEre2.scaffold_4770 2937589 95 - 17746568 UUUCCAUCGAAGCAGCAUUAUCAGCUGCCGUGGGCCUUUCGAUUCCAAAGUGACCAACAUCAUUAGGAAACUAAAC----------UGCCA-AAAGUUGUAU--UAUU--- ..((((.((..(((((.......)))))))))))........((((..(((((......))))).))))....(((----------(....-..))))....--....--- ( -18.60, z-score = -0.60, R) >droAna3.scaffold_13340 18329827 96 + 23697760 UGUCAUCAGAAGUCGAAGAGUCAGCUGCCGUUGGUCAAGCGAGUCCUUAGUGACCAAAAUCAUUAGGA---UAGGCGA-----UUUAGCUAAAAAAAAGUCUUC------- ..........(((..((..(((.((((((...)))..)))..(((((.(((((......)))))))))---).)))..-----))..)))..............------- ( -20.10, z-score = -0.60, R) >consensus _UUCCCCCGAAGCAGCAUUAUCAGCUGCCGUGGGUCAAGCGAAUCCAAAGUGACCAAGAUCAUUAGGAAACUAAACUG_____UCUUGCCAAAAAGUUGUAUACUAUUAU_ .....((((..(((((.......)))))..)))).........(((..(((((......))))).)))........................................... (-14.71 = -14.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:47 2011