| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,510,801 – 6,510,853 |
| Length | 52 |
| Max. P | 0.700136 |
| Location | 6,510,801 – 6,510,853 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 69.70 |
| Shannon entropy | 0.47249 |
| G+C content | 0.44222 |
| Mean single sequence MFE | -10.73 |
| Consensus MFE | -7.16 |
| Energy contribution | -7.98 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6510801 52 - 23011544 ACUUGGCUAGCUAAAAUGUGCUGGCCAGAUAAACAACCAUCCAAUAACCGCA------ ..(((((((((........)))))))))........................------ ( -14.80, z-score = -2.87, R) >droSec1.super_3 2051382 52 - 7220098 ACUUCGCUAGCUACAAUGUGCUGGCCAGAUAAACAAGCAACCAAUAACCGCA------ .....((((((........))))))...........((...........)).------ ( -9.70, z-score = -0.62, R) >droSim1.chr2L 6302058 52 - 22036055 ACUUCGCUAGCUUCAAUGUGCUGGCCAGAUAAACAAGCAACCAAUAACCGCA------ .....((((((........))))))...........((...........)).------ ( -9.70, z-score = -0.57, R) >droVir3.scaffold_12723 4521778 57 - 5802038 AGUUGGCCAACGGUAAGGUGUUAA-UACAUAAAAAAUAAACCAACCCCAAGGAAACGC .(((((...........((((...-.))))..........))))).....(....).. ( -8.70, z-score = 0.09, R) >consensus ACUUCGCUAGCUACAAUGUGCUGGCCAGAUAAACAAGCAACCAAUAACCGCA______ ...((((((((........))))))))............................... ( -7.16 = -7.98 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:29 2011