| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,668,191 – 2,668,302 |
| Length | 111 |
| Max. P | 0.512384 |
| Location | 2,668,191 – 2,668,302 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.09 |
| Shannon entropy | 0.61333 |
| G+C content | 0.40272 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -9.69 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2668191 111 - 27905053 AUCAUGCAAAUAAAUAUACAUGAGAAUUUAUGACCUCGGGCCUCGUAUAGCGAUCCCUUUCA---------AAUAAGUUGGAGCCUGGAACUGGCUUCCACUUGAGGAGGUAUCUUUACU .(((((............))))).........((((((((..(((.....))).))).....---------..(((((.((((((.......)))))).)))))..)))))......... ( -30.30, z-score = -1.72, R) >droAna3.scaffold_13340 18312144 84 + 23697760 ----UUUA---AAAUAUGAUUCAAAACUUACAGUAUCCAAAGACGUCUUCUGAACCACC------------ACAAAAGUGGUAGGAAAGGCAGUAUCCCCUUU----------------- ----....---.................(((.((........))(((((((..(((((.------------......))))).)).))))).)))........----------------- ( -12.30, z-score = -0.10, R) >droEre2.scaffold_4770 2917614 106 - 17746568 AUAAUACGA--AAAUAUUCACGAGAAUUUAUAACCGCGGGGCUUGUAAAGCGAUCCCUUUGA---------AAUAAGUUGGAGCCCAGAACUGGCUUCCAGUC---GAGUUAUCUUUACU (((((.(((--.............(((((((...((.((((.(((.....))).)))).)).---------.)))))))((((.(((....))).))))..))---).)))))....... ( -22.20, z-score = -0.21, R) >droYak2.chr3R 21087211 117 + 28832112 ACAAUACAAAUAAAUAUUCACGAGAAUCUGUAGCCUCGGGGCUUGUAUAGCGAUCGCCUUGAAAUAAUAAUAAUAAGUUGGAGCCAAGAACUGGCUCUCACUC---GAGUUAUCUUUACU ....................((((...........((((((((((.....)))..))))))).................(((((((.....)))))))..)))---)............. ( -25.10, z-score = -0.90, R) >droSec1.super_6 2759642 108 - 4358794 AUCAUGCAAAUAAAUAUACAUGCGAAUUUAUAACCUCGGUGGUCGUAUAGCGAUCCCUUUCA---------AAUAUGUUGGAGCCAGGAACUGGCUUCCACUC---GGGGUAUGUUUACU ..........(((((((((.(.(((............((.(((((.....))))))).....---------.....((.((((((((...)))))))).))))---).)))))))))).. ( -31.30, z-score = -2.20, R) >droSim1.chr3R 2702851 108 - 27517382 AUCAUGCAAGUAAAUAUACAUGCGAAUUUAUAACCUCGGGGCUCGUAUAGCGAUCCCUUUAA---------AAUAAGUUGGAGCCAGGAACUGGCUUCCACUC---GGGGUAUCUUUACU ....((((.(((....))).))))........(((((((((.(((.....))).))).....---------....(((.((((((((...)))))))).))))---)))))......... ( -34.70, z-score = -3.26, R) >consensus AUCAUGCAAAUAAAUAUACAUGAGAAUUUAUAACCUCGGGGCUCGUAUAGCGAUCCCUUUCA_________AAUAAGUUGGAGCCAAGAACUGGCUUCCACUC___GAGGUAUCUUUACU .....................................((((.(((.....)))))))..................(((.((((((.......)))))).))).................. ( -9.69 = -10.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:41 2011