| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,658,995 – 2,659,073 |
| Length | 78 |
| Max. P | 0.806912 |
| Location | 2,658,995 – 2,659,073 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 88.03 |
| Shannon entropy | 0.23857 |
| G+C content | 0.43353 |
| Mean single sequence MFE | -22.11 |
| Consensus MFE | -17.17 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2658995 78 + 27905053 GAUUGGCUCUGGGUUGCAUAACAGCAAUCCUAAGCAAACAGAUUUGAAAUUGAGGCAUUAAAUGUGGCCUAGGUCAAU .((((((.((((((..(((....((.........((((....))))........)).....)))..)))))))))))) ( -22.43, z-score = -1.87, R) >droSim1.chr3R 2693642 78 + 27517382 GAUUGGCUCUGGGUUGCAUAACAGCAAACCUAAGCAAACAGAUUUGAAAUUGAGGCAUUAAAGGUGGCCCAGGUCAAU .((((((.((((((..(......((.........((((....))))........)).......)..)))))))))))) ( -22.95, z-score = -1.77, R) >droSec1.super_6 2750376 78 + 4358794 GAUUGGCUCUGGGUUGCAUAACAGCAAACCUAAGCAAACAGAUUUGAAAUUGAGGCAUUAAAGGUGGCCCAGGUCAAU .((((((.((((((..(......((.........((((....))))........)).......)..)))))))))))) ( -22.95, z-score = -1.77, R) >droYak2.chr3R 21077896 78 - 28832112 GAUUGGCUCUGGGUUGCAUAACAGCAAACCUAAGCAAACAGAUUUGAAAUUGAGGCAUUAAAAGUGGCCCAGGUCAAU .((((((.((((((..(......((........))..............((((....))))..)..)))))))))))) ( -22.50, z-score = -1.89, R) >droEre2.scaffold_4770 2908238 78 + 17746568 GAUUGGCUCUGGGUUGCAUAACAGCAAAACUAUGCAAACAGAUUUCAAAUUGAGGCAUUAAAGGUGGCCCAGGUCAAU .((((((.((((((..(......(((......))).....(.((((.....))))).......)..)))))))))))) ( -24.40, z-score = -2.68, R) >droAna3.scaffold_13340 18303479 74 - 23697760 GAUUGACUGUGGGUUGCAUAACCGCGACUCCAGCCCG--AGAUU--AAAUUGAUGCAUUCUAGUUAACCCAGGUCAAC ..((((((.((((((((((........(((......)--))...--......))))).........))))))))))). ( -17.43, z-score = -1.08, R) >consensus GAUUGGCUCUGGGUUGCAUAACAGCAAACCUAAGCAAACAGAUUUGAAAUUGAGGCAUUAAAGGUGGCCCAGGUCAAU .((((((.(((((((((......((........))..............((((....))))..))))))))))))))) (-17.17 = -17.62 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:40 2011