| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,650,249 – 2,650,305 |
| Length | 56 |
| Max. P | 0.829462 |
| Location | 2,650,249 – 2,650,305 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 63.83 |
| Shannon entropy | 0.69138 |
| G+C content | 0.39361 |
| Mean single sequence MFE | -9.40 |
| Consensus MFE | -4.49 |
| Energy contribution | -4.02 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2650249 56 - 27905053 ACUUGAUAAUGUCAAAGUUAGGUGUUAUCCCUCACUCACUUUCUAAACCUUUCUAU-- ....((((((..(.......)..))))))...........................-- ( -5.70, z-score = -0.50, R) >droSim1.chr3R 2681228 56 - 27517382 ACUUGUAUAUGUCCAAGUAAGGUGUUAUCCCUCACUCACUUUCUACACCUUUCUAU-- (((((........)))))(((((((...................))))))).....-- ( -9.11, z-score = -2.27, R) >droSec1.super_6 2741496 56 - 4358794 ACUUGUAUAUGUCCAAGUAAGGUGUUAUCCCACACUCACUUUCUACACCUUUCUAA-- (((((........)))))(((((((...................))))))).....-- ( -9.11, z-score = -1.84, R) >droYak2.chr3R 21069153 56 + 28832112 ACUUGUAUAAUUCGAAGUUGGGUGUUACCCCUUUCUCAUUCUCUACAUCUUUCUGU-- ...((((.(((..((((..(((.....))).))))..)))...)))).........-- ( -5.50, z-score = -0.00, R) >droEre2.scaffold_4770 2899557 58 - 17746568 ACUUGUAUAUGUCGAAGACAGGUGUUGCCCCUAACUCACUUUCUACACCUUUUUGUAC ....(((((((((...))))(((((...................)))))....))))) ( -8.01, z-score = -0.07, R) >dp4.chr2 11074357 57 + 30794189 GCCUGGGGAUCCCAGAGAGAUUUCCUUUCUAUUCCCCUAAUUCUGGACUUUCUUUAU- ....(((((....((((((.....))))))..)))))....................- ( -14.20, z-score = -0.75, R) >droPer1.super_3 4912618 57 + 7375914 GCCUGGGGAUCCCAGAGAGAUUUCCUUUCUAUUCCCCUAAUUCUGGACUUUCUUUAU- ....(((((....((((((.....))))))..)))))....................- ( -14.20, z-score = -0.75, R) >consensus ACUUGUAUAUGUCAAAGUAAGGUGUUAUCCCUCACUCACUUUCUACACCUUUCUAU__ ...............((..((((((...................))))))..)).... ( -4.49 = -4.02 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:35 2011