| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,505,805 – 6,505,903 |
| Length | 98 |
| Max. P | 0.609488 |
| Location | 6,505,805 – 6,505,903 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 90.40 |
| Shannon entropy | 0.13258 |
| G+C content | 0.41063 |
| Mean single sequence MFE | -16.83 |
| Consensus MFE | -13.16 |
| Energy contribution | -13.05 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6505805 98 + 23011544 GAAAAUACAGUUGUCAAUGUCAUUGUGUCUAACCUCACCUUGCCAUUUGUGAACGUGUUUUUCUCUUUGUUUGGGCUCUUUUC----CGCCUCUUUCCUUUU ((((((((..(..(.((((.((..(((........)))..)).)))).)..)..))))))))..........((((.......----.)))).......... ( -17.30, z-score = -1.93, R) >droSim1.chr2L 6297116 97 + 22036055 GAAAAUGCAGUCGUCAAUGUCAUUGUGUCUAACCUCACCUUGCCAUUUGUGAACGUGUUUUACUCUUUGUUUGGCUCUUUUCC-----GCCUCUUUCCUUUU .(((((((..(((..((((.((..(((........)))..)).))))..)))..)))))))...........(((........-----)))........... ( -17.00, z-score = -2.16, R) >droYak2.chr2L 15913754 102 - 22324452 GAAAAUGCAGUCGUCAAUGUCAUUGUGUCUAACCUCACCUUGCCAUUCGUGAACGUGUUUUUCUCUUUGUUUGGCUGUUUUCCUAUCCGCCUCUUUCCUUUU ((((((((..(((..((((.((..(((........)))..)).))))..)))..))))))))..........(((.(.........).)))........... ( -16.20, z-score = -1.86, R) >consensus GAAAAUGCAGUCGUCAAUGUCAUUGUGUCUAACCUCACCUUGCCAUUUGUGAACGUGUUUUUCUCUUUGUUUGGCUCUUUUCC____CGCCUCUUUCCUUUU .(((((((..(((..((((.((..(((........)))..)).))))..)))..)))))))...........(((.............)))........... (-13.16 = -13.05 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:28 2011