| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,640,527 – 2,640,624 |
| Length | 97 |
| Max. P | 0.977620 |
| Location | 2,640,527 – 2,640,624 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 56.39 |
| Shannon entropy | 0.72296 |
| G+C content | 0.37864 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -9.27 |
| Energy contribution | -11.15 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2640527 97 - 27905053 ACGCUAACAAUGUGGGUUCUUCGAAAACGAUACUUUUAAAUACUGU--------UUU------GUUUACUGAU-------UGCGUAUACGUCACCGCCUUUCCAUUGGGCUUUGUUUA ..(((..(((((.((((.......((((((.((...........))--------.))------))))......-------.(((....)))....))))...))))))))........ ( -14.70, z-score = 0.80, R) >droSim1.chr3R 2671515 118 - 27517382 AUCAUAACACUGUGGGUUCUUCGAAAACGAUACUUACAAAAAGUAUACGUAUACUUUAUAAAAGUAUACGUAUAAAAGUAUGCGUAUCCGUCAUCCUCUUUCCAUUGCGCUUUGCUCA ..........(((((((...(((....))).))))))).....(((((((((((((.....)))))))))))))..((((.(((((...................)))))..)))).. ( -29.41, z-score = -4.27, R) >droSec1.super_6 2731536 118 - 4358794 AUCAUAACACUGUGGGUUCUUCGAAAACGAUACUUACAAAAAGUAUACGUAUACUUUAUAAAAGUAUACGUAUAAAAGUAUGCGUAUACGUCAACCUCUUUCCAUUGCGCUGUGCUCA ..........(((((((...(((....))).))))))).....(((((((((((((.....)))))))))))))..((((((((((...................))))).))))).. ( -30.41, z-score = -3.77, R) >droGri2.scaffold_14906 13968480 89 - 14172833 GCCCACACAUUUCGAG---UUGAAUGACAAUGCUCGUGA----UAUGCCCAUAAUUU----GAGUUCACCGUUCUGACUUGCCAUUAGCGUUGUUGUCAU------------------ ................---.((.(..((((((((.(((.----(((....)))....----((((.((......))))))..))).))))))))..))).------------------ ( -15.70, z-score = 0.43, R) >consensus ACCAUAACACUGUGGGUUCUUCGAAAACGAUACUUACAAAAAGUAUACGUAUACUUU____AAGUAUACGGAUAAAAGUAUGCGUAUACGUCAUCCUCUUUCCAUUGCGCUUUGCUCA ..........(((((((...(((....))).))))))).........................(((((((((((....)))))))))))............................. ( -9.27 = -11.15 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:24 2011