| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,630,810 – 2,630,863 |
| Length | 53 |
| Max. P | 0.796295 |
| Location | 2,630,810 – 2,630,863 |
|---|---|
| Length | 53 |
| Sequences | 8 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 77.86 |
| Shannon entropy | 0.44599 |
| G+C content | 0.41241 |
| Mean single sequence MFE | -13.44 |
| Consensus MFE | -5.32 |
| Energy contribution | -5.82 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796295 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 2630810 53 - 27905053 --CCUUUGGGA------UAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAA --.((((((((------((((((.....................)))))))))))).)).. ( -16.90, z-score = -3.63, R) >droSim1.chr3R 2661742 53 - 27517382 --CCUUUGGGA------UAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAA --.((((((((------((((((.....................)))))))))))).)).. ( -16.90, z-score = -3.63, R) >droSec1.super_6 2721821 53 - 4358794 --CCUUUGGGA------UAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAA --.((((((((------((((((.....................)))))))))))).)).. ( -16.90, z-score = -3.63, R) >droYak2.chr3R 21049890 53 + 28832112 --CCUUUGGGA------UAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAA --.((((((((------((((((.....................)))))))))))).)).. ( -16.90, z-score = -3.63, R) >droEre2.scaffold_4770 2876896 53 - 17746568 --CCUUUGGGA------UAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAA --.((((((((------((((((.....................)))))))))))).)).. ( -16.90, z-score = -3.63, R) >droAna3.scaffold_13340 5441296 52 - 23697760 ---CCUUCUGG------UAAUCCAGUCUCAUCCUCUUUCAUCCCGGAUUAUCCCAACAGAA ---...(((((------((((((.....................))))))).....)))). ( -7.20, z-score = -0.73, R) >droWil1.scaffold_181089 12000897 59 - 12369635 --CAUUUGGGAAAUCUUUAAUCCUGUCUCAUCCUCUUUCAUCUGGGAUUAUCUCAACAGAA --...((((((......(((((((...................)))))))))))))..... ( -8.41, z-score = 0.35, R) >triCas2.ChLG2 2533554 61 - 12900155 CAUUUUGGAAAACUGGAUUAUAUUAUAUUCUAAUUCUGCGUCAAAAAUUGCACCAAUAGCA ....((((......((((((.(......).))))))((((........))))))))..... ( -7.40, z-score = -0.27, R) >consensus __CCUUUGGGA______UAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAA .....((((((......((((((.....................))))))))))))..... ( -5.32 = -5.82 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:21 2011