| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,502,335 – 6,502,463 |
| Length | 128 |
| Max. P | 0.631644 |
| Location | 6,502,335 – 6,502,463 |
|---|---|
| Length | 128 |
| Sequences | 9 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 70.81 |
| Shannon entropy | 0.59686 |
| G+C content | 0.32942 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -7.92 |
| Energy contribution | -8.59 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6502335 128 - 23011544 UUUGGUAGUUCAUUUCAUUAGCC---ACAUUUUCUU--UCUUAUCGCAACUGAGUGGCGGGAAGGAGACCAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUGAAAUGCUCAUUGGGCAU-UAAAUUU .(..((.(..(((((((((....---.(((((((((--(((..((((......))))..)))))))))..)))..((((((((((.......))))))))))...)))))))))..)))..)....-....... ( -34.40, z-score = -3.12, R) >droSim1.chr2L 6293739 128 - 22036055 UUUGGUAGUUCAUUUCAUUAGCC---ACAUUUUCUU--CCUUAUCGCAACUGAGUGGCGGGAAGGAGACCAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUGAAAUGCUCAUUGGGCAU-UAAAUUU .(..((.(..(((((((((....---...(((((((--(((..((((......)))).)))))))))).......((((((((((.......))))))))))...)))))))))..)))..)....-....... ( -32.50, z-score = -2.31, R) >droSec1.super_5 4551394 119 - 5866729 UUUGGUAGUUCAUUUCAUUAGCC---ACAUUUUCUU--CGUUAUCGCAACUGAGUGGCGGGAAGGAGACCAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUGAAAUGCUCAUUGGGU---------- ((..((.(..(((((((((....---.(((..((((--(....((((.((...)).))))...)))))..)))..((((((((((.......))))))))))...)))))))))..)))..)).---------- ( -30.40, z-score = -2.11, R) >droYak2.chr2L 15910205 128 + 22324452 UUUGGUAAUUCAUUUCAUUAGCC---ACAUUUGCCU--CCUUAUCGCAACUGAACGGCGGGAAGGAGAGCAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUGAAAUGGUCACUGGGCAU-UAAAUUU .(..((...((((((((((....---.....(((((--((((..(((.........)))..)))))).)))....((((((((((.......))))))))))...))))))))))..))..)....-....... ( -37.90, z-score = -3.94, R) >droEre2.scaffold_4929 15410800 128 - 26641161 UUUGGUAAUUCAUUUCAUUAGCC---ACAAUUUCUU--CCUUAUCGCACCUGAGUGGCGGGAAGGAGACCAUGAAAUAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUGAAAUGCUCACUGGGCAU-UAAAUUU .(..((....(((((((((....---....((((((--(((..((((......)))).)))))))))..........((((((((.......)))))))).....)))))))))...))..)....-....... ( -29.00, z-score = -1.28, R) >droAna3.scaffold_12916 2604364 108 + 16180835 -----------------UCAGGC---ACAAUUCAUUAACCUUAUCGUGUU-----GGCGGGAAAGAGCCCAUGAAAAAUCUCAUCAAAAUAAUGUGUGAUUUAUAAAUAAAAUGGCCAUUUGGCAU-CAAAUUU -----------------...(((---.((..............(((((..-----(((........)))))))).(((((.((.((......)))).)))))..........)))))(((((....-))))).. ( -18.70, z-score = 0.38, R) >dp4.chr4_group1 1559770 112 - 5278887 UUUACCAUUCCAUUUAAUUAGCCCGAACAUUCCCUU--CCUUAUCGGCCC-------------------CAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUAAAAUGCCUAUUUGGCAU-UAAAUUU ...........(((((......((((..........--.....))))...-------------------......((((((((((.......)))))))))).)))))..((((((.....)))))-)...... ( -19.56, z-score = -2.75, R) >droPer1.super_5 3166807 112 + 6813705 UUUACCAUUCCAUUUAAUUAGCCCGAACAUUCCCUU--CCUUAUCGGCCC-------------------CAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUAAAAUGCCUAUUUGGCAU-UAAAUUU ...........(((((......((((..........--.....))))...-------------------......((((((((((.......)))))))))).)))))..((((((.....)))))-)...... ( -19.56, z-score = -2.75, R) >droVir3.scaffold_12723 4510317 109 - 5802038 -------CUUGAAUCAAUCUGCUU--AUUAUUCUCAGACCUUACACAGCCC-----------CUAACAGCAAGAAAAAUCACAUAAAAGCUAUGUAUAA-----AAAUAAAAUGGCUAUUAAGCACAUUUAUUU -------...((((.(((.(((((--(....................((..-----------......)).................((((((......-----.......))))))..)))))).))).)))) ( -12.62, z-score = -0.22, R) >consensus UUUGGUAGUUCAUUUCAUUAGCC___ACAUUUCCUU__CCUUAUCGCAACUGA__GGCGGGAAGGAGACCAUGAAAAAUCACAUAAAAAUAAUGUGUGAUUUAUAAAUGAAAUGCUCAUUGGGCAU_UAAAUUU ....................(((....................................................((((((((((.......))))))))))...((((.......)))).))).......... ( -7.92 = -8.59 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:28 2011