| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,517,453 – 2,517,546 |
| Length | 93 |
| Max. P | 0.615943 |
| Location | 2,517,453 – 2,517,546 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Shannon entropy | 0.43762 |
| G+C content | 0.44082 |
| Mean single sequence MFE | -22.69 |
| Consensus MFE | -13.22 |
| Energy contribution | -13.07 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2517453 93 - 27905053 UUCCAAUUAGGUGUCAUCAAUGUCACCAAGUAGCGUAUAAAAU-AAACGGCCCA-CAAUGGGUCAGACAUUCAGUGUUUGGCUUCGGCUCAAGAC .....(((..(((((....(((..((...))..))).......-....(((((.-....))))).)))))..))).((((((....)).)))).. ( -23.70, z-score = -2.06, R) >droSim1.chr3R 2550073 93 - 27517382 UUCCAAUUAGGUGUCAUCAAUGUCACCAAGUAGCGUAUAAAAU-CAACGGCCCA-CAAUGGGUCAGACAUUCAGUGUUUGGCUUCGGCUCAAGAC .....(((..(((((....(((..((...))..))).......-....(((((.-....))))).)))))..))).((((((....)).)))).. ( -23.70, z-score = -2.00, R) >droSec1.super_6 2611325 93 - 4358794 UUCCAAUUAGGUGUCAUCAAUGUCACCAAGUAGCGUAUAAAAU-CAACGGCCCA-CAAUGGGUCAGACAUUCAGUGUUUGGCUUCGGCUCAAGAC .....(((..(((((....(((..((...))..))).......-....(((((.-....))))).)))))..))).((((((....)).)))).. ( -23.70, z-score = -2.00, R) >droYak2.chr3R 20934896 93 + 28832112 UUCCAAUUAGGUGUCAUCAAUGUCACCAAGUAGCGUAUAAAAU-CAACGGCUCA-CACCGGAUCAGACAUUCAGUGUUUGACUUCGGCUCAAGAC .........((((.((....)).))))..(((((((.......-..)).))).)-).(((((((((((((...)))))))).)))))........ ( -21.60, z-score = -1.74, R) >droEre2.scaffold_4770 2760635 93 - 17746568 UUCCAAUUAGGUGUCAUCAAUGUCACCAAGUAGCGUAUAAAAU-CCACGGCCCA-CACUGGGUCAGACAUUCAGUGUUUGGCUUCGGCUCAAGAC .....(((..(((((....(((..((...))..))).......-....(((((.-....))))).)))))..))).((((((....)).)))).. ( -23.70, z-score = -1.50, R) >droAna3.scaffold_13340 18176896 94 + 23697760 UUCCAAUUAGGUGUCAUCAAUGUCAGCUCAUCGCAUAUAAAAUCCCAUGGGCCA-CCACAGGUCAGACAUUCAGUGUUUGGCUUUAGACCAAGUC .........((((............((((((.(.((.....)).).))))))))-))..(((((((((((...)))))))))))........... ( -18.50, z-score = -0.39, R) >dp4.chr2 10935824 94 + 30794189 UUCCAAUUAGGUGUCAUCAAUGUCAUUGGAUCGUGUAUAAAAUCCAAUGGCCCG-AGACGGGUCAGACAUUCAGUGUUUGGCUUUAGCCCAAGAC .........((((((.((...((((((((((..........))))))))))..)-))))(((((((((((...)))))))))))..)))...... ( -28.10, z-score = -2.30, R) >droPer1.super_3 4769095 94 + 7375914 UUCCAAUUAGGUGUCAUCAAUGUCAUUGGAUCGCGUAUAAAAUCCAAUGGCCCG-AGACGGGUCAGACAUUCAGUGUUUGGCUUCAGCCCAAGAC .........((((((.((...((((((((((..........))))))))))..)-))))(((((((((((...)))))))))))..)))...... ( -28.10, z-score = -2.22, R) >droWil1.scaffold_181089 11854316 91 - 12369635 UUCCAAUUAGGUGUCAUCAAUGUCAUCCAAUCGACUAUAUAAU-CGAUGGUCAAUCAAUUGGUAAGACAUUCAGUCUUUGACUUUUGUUUAA--- ..((((((.((((.((....)).)))).....((((((.....-..))))))....))))))..(((((...((((...))))..)))))..--- ( -18.60, z-score = -1.60, R) >droVir3.scaffold_13047 12982642 94 + 19223366 UUCCAAUUAGGUGUCAUCAAUGUCAGCGAGUUGACUAUAUAACCUUAUGGCCGC-AGCUUGGUCAGACAUUCAGUGUUCAGCUUCUGCUUCAGAC ........((.((.(((.(((((((.(((((((.(((((......)))))...)-)))))).)..))))))..)))..)).))((((...)))). ( -20.70, z-score = 0.08, R) >droMoj3.scaffold_6540 1829191 94 - 34148556 UUCCAAUUAGGUGUGACCAAUGUCAUCGGAUUGACUAUAUAACCUUACGUCCAC-CGUUUGGCCAGACAUUCAGUGUUUAGCUUCUGCUUCCAAC .........((((.(((....((((......))))..((......)).))))))-)((..(((.((((((...)))))).)))...))....... ( -18.50, z-score = -0.36, R) >droGri2.scaffold_14906 2600309 94 + 14172833 UUCGAAUUAGGUGUCAUCAAUGUCACCGAGUUGACUAUAUAACAUUAUGGCCAG-CACUCGGCCAGACAUUCAGUGUUCAGCUGCUGCUUAGGAC .((((....((((.((....)).))))...))))(((((......)))))((((-((..((((..(((((...)))))..)))).))))..)).. ( -23.40, z-score = -0.47, R) >consensus UUCCAAUUAGGUGUCAUCAAUGUCACCAAGUAGCGUAUAAAAU_CAACGGCCCA_CAAUGGGUCAGACAUUCAGUGUUUGGCUUCGGCUCAAGAC .........((((.((....)).)))).....................(((((......)))))((((((...))))))(((....)))...... (-13.22 = -13.07 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:12 2011