| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,469,504 – 2,469,575 |
| Length | 71 |
| Max. P | 0.898049 |
| Location | 2,469,504 – 2,469,575 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 69.78 |
| Shannon entropy | 0.53508 |
| G+C content | 0.43707 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -9.60 |
| Energy contribution | -10.08 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2469504 71 - 27905053 AAUUUUUAGAGGUAUCCGUACUAAU--UGAGUGGUAAGACCCGUC-GGGUUGGAUUGCCUCUCUUAUCAGCCCC .......((((((((((.(((((..--....))))).(((((...-)))))))).)))))))............ ( -20.20, z-score = -1.58, R) >droSim1.chr3R 2501755 72 - 27517382 ACUUUUUAGAGGUAUCCGUACUAAU--UGAUUGGUAAGACCCGUCACGGUCAGAUUGCCUCUCUUAUCAGCACC .......(((((((..(.((((((.--...)))))).((((......)))).)..)))))))............ ( -17.80, z-score = -1.74, R) >droSec1.super_6 2562652 72 - 4358794 AGUUUUUAGAGGUAUCCGUACUAAU--UGAUUGGUAAGACCCCUCACGGUCAGAUUGCCUCUCUUAUCAGCACC .......(((((((..(.((((((.--...)))))).((((......)))).)..)))))))............ ( -17.80, z-score = -1.71, R) >droEre2.scaffold_4770 2712509 74 - 17746568 ACUUUCUAGAGGUAUUUGAACUAAUGAUAAUUGGUAGGACCCGGCAGGGUGAGAAUGCCUCUCUUAUCAUCCCC .......((((((((((..((((((....))))))...((((....))))..))))))))))............ ( -22.00, z-score = -1.49, R) >droAna3.scaffold_13340 13692245 70 - 23697760 -AUAUCAUUAAGCUCUGUAGUUGGC--UGAUAAGCCAAACAACCGACAGAUAGAUUG-UUUUCUUAUCAGUGCC -.........((((....)))).((--(((((((..((((((.(........).)))-))).)))))))))... ( -14.70, z-score = -1.30, R) >consensus AAUUUUUAGAGGUAUCCGUACUAAU__UGAUUGGUAAGACCCGUCACGGUCAGAUUGCCUCUCUUAUCAGCACC .......(((((((.....((((((....))))))..((((......))))....)))))))............ ( -9.60 = -10.08 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:07 2011