| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,441,198 – 2,441,297 |
| Length | 99 |
| Max. P | 0.827259 |
| Location | 2,441,198 – 2,441,297 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.01 |
| Shannon entropy | 0.33582 |
| G+C content | 0.53984 |
| Mean single sequence MFE | -36.85 |
| Consensus MFE | -21.26 |
| Energy contribution | -21.43 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2441198 99 - 27905053 GUCCGAGUGAGGAGAUGCGGCCAAAUGCCCUGGGGAGUUUUCCGAAAGCGAAAUUUCCCUUUUGGCCAGCGAGAGAACUGGA----CAUGUUCAUCUGAGCCU ((((.(((.......((((((((((......((((((((((.(....).)))))))))).))))))).))).....))))))----)..((((....)))).. ( -37.00, z-score = -2.23, R) >droSim1.chr3R 2471432 97 - 27517382 GUCCGAGUGAGGAGAUGCGGCCAAAUGCCCUGGGGCGUUUUCCGAAAGCGAAAUUUCCCUUUUGGCCAGC--GAGAACUGGA----CAGGUUCAUCCGAGCCU ((((.(((.......((((((((((......((((.(((((.(....).))))).)))).))))))).))--)...))))))----)((((((....)))))) ( -36.70, z-score = -1.60, R) >droSec1.super_6 2535145 97 - 4358794 GUCCGAGUGAGACGAUGCGGCCAAAUGCCCUGGGGCGUUUUCCGAAAGCGAAAUUUCCCUUUUGGCCAGC--GAGAACUGGA----CAGGUUCAUCCGAGCCU ((((.(((....(..((((((((((......((((.(((((.(....).))))).)))).))))))).))--).).))))))----)((((((....)))))) ( -36.80, z-score = -1.94, R) >droYak2.chr3R 18358237 93 - 28832112 GUCCGAGUAA---GAUGCGGCAAAAUGCCCUGGGGCG-UUUCCUAAAGUGAAAUUUACCUUUAGGGCAGC--GGGGACUGGA----CAGGUUCAUCUGAGCCU ((((.(((..---..(((.((.(((((((....))))-)))(((((((.(.......)))))))))).))--)...))))))----)((((((....)))))) ( -37.30, z-score = -2.62, R) >droEre2.scaffold_4770 2684810 94 - 17746568 GUCCGAGUGG---CAUGCGGCAAAAUGCCCUGGGGCGUUUUCCGAAAGCGAAAUUUCCCUUUUGGGCAGC--GAGAACUGGA----CAGGUUCAUCUGAGCCU ((((.(((..---(.(((.((((((((((....))))))))(((((((.((....)).))))))))).))--).).))))))----)((((((....)))))) ( -39.00, z-score = -2.33, R) >droAna3.scaffold_13340 13667292 96 - 23697760 GUCUGAGUG-------GGAAAGAAUCGCUGUGGGGCGUUCUCCGAAAGGGAAAUUUCCCUUUUGGCCAAAGUAAAAGACGGAAAAGCAGGUUCAUCUGAGCCA ((((...((-------(...((((.((((....))))))))((((((((((....))))))))))))).......)))).........(((((....))))). ( -34.30, z-score = -2.34, R) >consensus GUCCGAGUGA___GAUGCGGCCAAAUGCCCUGGGGCGUUUUCCGAAAGCGAAAUUUCCCUUUUGGCCAGC__GAGAACUGGA____CAGGUUCAUCUGAGCCU .((((.................(((((((....))))))).(((((((.((....)).))))))).............))))......(((((....))))). (-21.26 = -21.43 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:05 2011