Locus 8891

Sequence ID dm3.chr3R
Location 2,440,332 – 2,440,428
Length 96
Max. P 0.996199
window12200

overview

Window 0

Location 2,440,332 – 2,440,428
Length 96
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 87.50
Shannon entropy 0.17196
G+C content 0.40698
Mean single sequence MFE -30.45
Consensus MFE -24.20
Energy contribution -24.87
Covariance contribution 0.67
Combinations/Pair 1.07
Mean z-score -3.58
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.90
SVM RNA-class probability 0.996199
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 2440332 96 - 27905053
----GCUGUACAGUGGGCAUGCACUUGAAGGUGUGUUUCGAUUUCUUAACCCUUUUUUAGUAAAUCGAAAUAUCCACUUUUUAAUGUGUGCCCUCGAAUA
----........(.(((((((((...((((((((((((((((((.((((.......)))).)))))))))))..)))))))...))))))))).)..... ( -32.90, z-score =  -5.54, R)
>droSim1.chr3R 2470542 94 - 27517382
----GCUGCACAGUGGGCAUGCACUUGAAGGUGUGUUGCGA--UCUUAACCAUUUUCUAGAAAUUGGAAUUAACCACUUUUGAAUGUGUGCCCUCGAAUA
----........(.(((((((((.(..((((((.((((...--......(((.(((....))).)))...))))))))))..).))))))))).)..... ( -27.90, z-score =  -2.27, R)
>droSec1.super_6 2534281 100 - 4358794
GCUAGCUGCACAGUGGGCAUGCACUUGAAGGUGUGUUGCGAUUUCUUAACCAUUUUCUACAAAUUGGAAUUAACCACUUUUAAUUGUGUGCCCUCGAAUA
((.....))...(.(((((((((.(((((((((.(((..((((((....................)))))))))))))))))).))))))))).)..... ( -30.55, z-score =  -2.93, R)
>consensus
____GCUGCACAGUGGGCAUGCACUUGAAGGUGUGUUGCGAUUUCUUAACCAUUUUCUAGAAAUUGGAAUUAACCACUUUUAAAUGUGUGCCCUCGAAUA
............(.(((((((((.(((((((((.((((.(....).))))....(((((.....))))).....))))))))).))))))))).)..... (-24.20 = -24.87 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:04 2011