| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,432,889 – 2,432,939 |
| Length | 50 |
| Max. P | 0.862711 |
| Location | 2,432,889 – 2,432,939 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 94.67 |
| Shannon entropy | 0.07346 |
| G+C content | 0.52667 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -10.85 |
| Energy contribution | -11.30 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2432889 50 - 27905053 AUCAGUGAUGCGAAGUGGCGACUACGAAAGGAAGCUGACCGGAAGGACAG .(((((..(((......)))....(....)...)))))((....)).... ( -12.80, z-score = -1.86, R) >droSim1.chr3R 2462513 50 - 27517382 AUCAGUGAUGCGAAGCGCAGAUUACGAAAGGAAGCUGACCGGAAGGACAG .(((((..((((...)))).....(....)...)))))((....)).... ( -14.00, z-score = -2.85, R) >droSec1.super_6 2526361 50 - 4358794 AUCAGUGAUGCGAAGCGCAGAUUACGAAAGGAAGCUGACCGGAAGGACAG .(((((..((((...)))).....(....)...)))))((....)).... ( -14.00, z-score = -2.85, R) >consensus AUCAGUGAUGCGAAGCGCAGAUUACGAAAGGAAGCUGACCGGAAGGACAG .(((((..((((...)))).....(....)...)))))((....)).... (-10.85 = -11.30 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:02 2011