| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,430,725 – 2,430,784 |
| Length | 59 |
| Max. P | 0.571132 |
| Location | 2,430,725 – 2,430,784 |
|---|---|
| Length | 59 |
| Sequences | 7 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 69.04 |
| Shannon entropy | 0.59996 |
| G+C content | 0.53766 |
| Mean single sequence MFE | -18.44 |
| Consensus MFE | -7.03 |
| Energy contribution | -7.76 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2430725 59 + 27905053 AGAAUGCGGCUUCAACGCGCCGCAGUUGCAGCUCCAGCUGCAG-AUCCUUUUCAUCCUGA .(((((((((........)))))).(((((((....)))))))-......)))....... ( -22.20, z-score = -2.41, R) >droSim1.chr3R 2460294 59 + 27517382 AGAAUGCGGCUUCACCGCGCUGCAGUUGCAGCUCCAGCUGCAG-AUCCUUUUCAUCCUGA .(((.((((.....)))).(((((((((......)))))))))-......)))....... ( -20.80, z-score = -1.68, R) >droSec1.super_6 2524304 59 + 4358794 AGAAUGCGGCUUCACCGCGCUGCAGUUGCAGCUCCAGCUGCAG-AUCCUUUUCAUCCUGA .(((.((((.....)))).(((((((((......)))))))))-......)))....... ( -20.80, z-score = -1.68, R) >droYak2.chr3R 18347574 59 + 28832112 AGAAUGCGGCUUUACCUCGCUGCAGUUGCAGCUCCAGCUGCAG-AUCCUUUUCAUCCUGA .(((((((((........)))))).(((((((....)))))))-......)))....... ( -20.00, z-score = -2.05, R) >droEre2.scaffold_4770 2674029 59 + 17746568 AGAAUGCGGCUUCGCCGCGCUGCAGUUGCAACUCGAGCUGCAG-AUCCUUUUAAUCCUGA .....(((((...))))).((((((((........))))))))-................ ( -19.80, z-score = -1.35, R) >droVir3.scaffold_12855 1128165 60 - 10161210 AGACUGCGAUGCUAUGCCAAUGUCAUACCCCCCAGUGCUACAAUGGUCAAUGCAUUCGCA .....(((((((...((((.(((..(((......)))..))).))))....))).)))). ( -17.10, z-score = -1.91, R) >droMoj3.scaffold_6540 9987622 56 - 34148556 CAACUGCGAUUCUACGCCAAUGCCA----CCCAAGCGCCACAAUGGGCUUUGUAUUCUGA .....(((......))).(((((..----...((((.((.....)))))).))))).... ( -8.40, z-score = 0.88, R) >consensus AGAAUGCGGCUUCACCGCGCUGCAGUUGCAGCUCCAGCUGCAG_AUCCUUUUCAUCCUGA .......((..........(((((((((......)))))))))............))... ( -7.03 = -7.76 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:54:01 2011