| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,421,403 – 2,421,468 |
| Length | 65 |
| Max. P | 0.723844 |
| Location | 2,421,403 – 2,421,468 |
|---|---|
| Length | 65 |
| Sequences | 8 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 83.16 |
| Shannon entropy | 0.31983 |
| G+C content | 0.42364 |
| Mean single sequence MFE | -15.62 |
| Consensus MFE | -11.20 |
| Energy contribution | -10.88 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2421403 65 + 27905053 GCAGAAUGUAAAUGCCAGCCCGAAGUGCUCGGGAUAACUUUGCAUUUAUUUUCAUUU-----UUGCACCG ((((((.((((((((...(((((.....)))))........))))))))......))-----)))).... ( -18.70, z-score = -2.71, R) >droSim1.chr3R 2451137 65 + 27517382 GCAGAAUGUAAAUGCCAGCCCGAAGUGCUCGGGAUAACUUUGCAUUUAUUUUCAUUU-----UUGCACCG ((((((.((((((((...(((((.....)))))........))))))))......))-----)))).... ( -18.70, z-score = -2.71, R) >droSec1.super_6 2515353 65 + 4358794 GCAGAAUGUAAAUGCCAGCCCGAAGUGCUCGGGAUAACUUUGCAUUUAUUUUCAUUU-----UUGCACCG ((((((.((((((((...(((((.....)))))........))))))))......))-----)))).... ( -18.70, z-score = -2.71, R) >droYak2.chr3R 18337725 65 + 28832112 GCAGAAUGUAAAUGCCAACUCGAAGUGCCCGGGAUAACUUUGCAUUUAUUUUCAUUU-----UUGCACCC ((((((.((((((((......(((((.(....)...)))))))))))))......))-----)))).... ( -14.10, z-score = -1.53, R) >droEre2.scaffold_4770 2664013 69 + 17746568 GCAGAAUGUAAAUGCCAGCCCGAAGUGCUCGG-AUAACUUUGCAUUUAUUUUCAUUUCAUUUUUGCACCG ((((((.((((((((.((.((((.....))))-....))..))))))))...........)))))).... ( -14.20, z-score = -1.36, R) >droAna3.scaffold_13340 13646130 63 + 23697760 GAGGAAUGUAAAUGGCAACCUGAAGUGCUCGAGGUUCCUUUGCAUUUAUUUUCAUUU-----CUUCAC-- ((((((((((((.((.(((((((.....)).))))))))))))))...........)-----))))..-- ( -16.00, z-score = -1.95, R) >dp4.chr2 10836467 66 - 30794189 -GCAAAUGUAAAUGGCAACCUGAAGUGCUUGGGAUUCUUUUGCAUUUAUUCUCAUUGC---CUUGCCCCG -((((........(((((...(((((((..(((...)))..))))...)))...))))---))))).... ( -12.30, z-score = 0.14, R) >droPer1.super_3 4671983 66 - 7375914 -GCAAAUGUAAAUGGCAACCUGAAGUGCUUGGGAUUCUUUUGCAUUUAUUCUCAUUGC---CUUGCCCCG -((((........(((((...(((((((..(((...)))..))))...)))...))))---))))).... ( -12.30, z-score = 0.14, R) >consensus GCAGAAUGUAAAUGCCAACCCGAAGUGCUCGGGAUAACUUUGCAUUUAUUUUCAUUU_____UUGCACCG ...(((((((((......(((((.....))))).....)))))))))....................... (-11.20 = -10.88 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:58 2011