| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,385,948 – 2,386,072 |
| Length | 124 |
| Max. P | 0.537117 |
| Location | 2,385,948 – 2,386,072 |
|---|---|
| Length | 124 |
| Sequences | 6 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 72.24 |
| Shannon entropy | 0.53383 |
| G+C content | 0.29595 |
| Mean single sequence MFE | -23.11 |
| Consensus MFE | -10.85 |
| Energy contribution | -10.55 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537117 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 2385948 124 + 27905053 UUGCUGUUCGUGGUUUUUAAAUAGUCUUUUGUGAAUAAUUCAUUUAUU------UUUUUUUCUGAUUAAGGUGCUGCGAAAGCAGCCUUUACUGUAAAGAGCUUGUUUUUAUUUGUUUCUCGCUUUAUUU ..(((.((..((((.......(((((......((((((.....)))))------)........)))))(((.(((((....)))))))).))))..)).)))............................ ( -24.14, z-score = -1.27, R) >droEre2.scaffold_4770 2627601 126 + 17746568 UUGCUGUUGGU----UUCAAAUAGUCCUCAGUGAAUUAUUCAUUUAUUAGUAUAUUUUUUUUUGAUUAAGGUGCUGCGAAAGCAGCCUUUACUGCAAAGAGCUUGUUUUUAUUUGAUUUUCGCCCUAUUU ..((((((...----....)))))).....(((((....(((..((.....(((...(((((((..(((((.(((((....))))))))))...)))))))..)))...))..)))..)))))....... ( -29.20, z-score = -2.21, R) >droYak2.chr3R 18301132 130 + 28832112 UUGCUGUUUUUGGUUUUUGAAUAGUCUUCUGUGAAUUAUUCAUUUAUUUUUAUUUUUUUGCUGGCUUAAGUUGCUGCAAAAGCAGCCUUUACUAUAAAGAGCUGGUUUUUAUUUGAUUUUCUCUUUUUUU ..((((((((((.....(((((((((......).))))))))....................(((.......))).)))))))))).........((((((..((((.......))))..)))))).... ( -25.70, z-score = -1.46, R) >droSec1.super_6 2479351 123 + 4358794 UUGCUGUUCUUGGUUUUUAAGUAGUCUUUUGUAAAUUAUUCAUUUAUU-------UUUUUUUGGAUUAAGAUGCUGCGAAAGCAGCGUUUACUGAAAAAAGCUUGUUUUUAUUUAUUUCUCGCUUUAUUU ..(((.((.(..((.......((((((.....(((.((......)).)-------)).....))))))(((((((((....)))))))))))..).)).)))............................ ( -24.30, z-score = -1.41, R) >droSim1.chr3R 2413881 122 + 27517382 UUGCUGUUCUUGGUUUUUAAGUAGUCUUUUGUGAAUUAUUCAUUUAUU-------UUUUAU-GGAUUAAGCUGCUGCGAAAGCAGCGUUUACUGAAAAAAGCUUGUUUUUAUUUAUUUCUCGCUUUAUUU ..(((.(((..................((..((((..((......)).-------.)))).-.)).(((((.(((((....))))))))))..)))...)))............................ ( -22.40, z-score = -0.17, R) >droVir3.scaffold_12875 6707694 119 + 20611582 UUGAUGUUUCCAUUUUAUAAGUCCCCUUUUGUAUUUGACUGUUUCCAU------UCAUUUUCCAAAUGAUAUGUUGCUCAAAUAGCUGCAAC-----ACAGCCCACUAUCCCUUUUUUUUUCUUUCAUUU ..((((....((...((((((......))))))..)).((((......------(((((.....)))))...(((((..........)))))-----)))).....)))).................... ( -12.90, z-score = -1.11, R) >consensus UUGCUGUUCUUGGUUUUUAAAUAGUCUUUUGUGAAUUAUUCAUUUAUU______UUUUUUUUGGAUUAAGAUGCUGCGAAAGCAGCCUUUACUGAAAAGAGCUUGUUUUUAUUUGUUUCUCGCUUUAUUU ..(((..............((((((.(.....).))))))..........................(((((.(((((....))))))))))........)))............................ (-10.85 = -10.55 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:54 2011