| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,378,997 – 2,379,097 |
| Length | 100 |
| Max. P | 0.638981 |
| Location | 2,378,997 – 2,379,097 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.05510 |
| G+C content | 0.47667 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -13.99 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2378997 100 + 27905053 GAGCCCAGAGAUCCAUAGAUGACGACCCCAUCCCAAAACCCCACUUGCACGUAUAUACGAUGGUAUACGAGUAUAAAACCAAACCCAGAGUCAGCAAUCA .........((..(...((((.......)))).............(((.(((((((......))))))).)))..............)..))........ ( -12.70, z-score = -1.13, R) >droSim1.chr3R 2406938 100 + 27517382 GAGCCCAGAGAUCCAUAGAUGACGACCCCAUCCCAAAACCCUACUCGCACGUAUAUACGAGAGUAUACGGGUAUAAAACCAAACCCAGAGUCAGCAAUCA ..((.............((((.......))))..........((((.......(((((....))))).((((..........)))).))))..))..... ( -17.30, z-score = -2.05, R) >droSec1.super_6 2472437 100 + 4358794 GAGCCCAGAGAUCCAUAGAUGACGACCCCAUCUCAAAACCCCACUCGCACGUAUAUACGAGAGUAUACGGGUAUAAAACCAAACCCAGAGUCAGCAAUCA ..((............(((((.......))))).........((((.......(((((....))))).((((..........)))).))))..))..... ( -18.30, z-score = -2.23, R) >consensus GAGCCCAGAGAUCCAUAGAUGACGACCCCAUCCCAAAACCCCACUCGCACGUAUAUACGAGAGUAUACGGGUAUAAAACCAAACCCAGAGUCAGCAAUCA ..((.............((((.......))))..........((((....((((((......))))))((((..........)))).))))..))..... (-13.99 = -14.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:53 2011