| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,480,819 – 6,480,885 |
| Length | 66 |
| Max. P | 0.992380 |
| Location | 6,480,819 – 6,480,885 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 67.05 |
| Shannon entropy | 0.64241 |
| G+C content | 0.46154 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -8.55 |
| Energy contribution | -10.12 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992380 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 6480819 66 - 23011544 AUAGUAUCGGUCGCUAGGUGCCAGCCGGUGCCAGCGAUGGACACACAACUA---------AAUAUCGAAACUCCU ...((.((.((((((.((..((....))..)))))))).)).)).......---------............... ( -23.20, z-score = -2.96, R) >droSim1.chr2L 6271965 73 - 22036055 AUAGUAUCGGUAGCUAGGUAUCAGCCGGUGCCAGCGAUGGACU--CAACUAUCGCUAUCUAAUAUCGAAACUCCU ..(((.((((((....((((((....))))))((((((((...--...))))))))......)))))).)))... ( -25.60, z-score = -3.41, R) >droSec1.super_5 4530114 75 - 5866729 AUAGUAUCGGUAGAUAGGUAUCAGCCGGUGCCAGCGAUGGACUCACAACUAUCGCUAUCUAAUAUCGAAACUCCU ..(((.((((((....((((((....))))))((((((((........))))))))......)))))).)))... ( -25.40, z-score = -3.39, R) >droYak2.chr2L 15888412 67 + 22324452 AUAGUAUCGGUCGCUAGGUGUCAGCCGGUGACAGCGAUUGCCUUACGACUAUCGCCACCUGAUAUCG-------- .((((.......))))((((((((..(((((.((((.........)).)).)))))..)))))))).-------- ( -19.90, z-score = -0.85, R) >droEre2.scaffold_4929 15389680 75 - 26641161 AUAAUAUCGUUCACUAGGUGUCAGCCGGUGCCAGCGAUGGCCUCACGACUAUCGCCAUCUAAUAUCGAUGCCUUU ...............(((((((.((.(....).))((((((............)))))).......))))))).. ( -18.80, z-score = -0.79, R) >droPer1.super_5 3144370 69 + 6813705 GCCGUAUCAUUUUUGAGUCUCAUGGCGAUAUUA-UAUUCGAUAUUCGUCUAU-----UUUUAUAUCGAAUAUUCU (((((.(((....))).....)))))......(-((((((((((........-----....)))))))))))... ( -15.90, z-score = -2.94, R) >consensus AUAGUAUCGGUCGCUAGGUGUCAGCCGGUGCCAGCGAUGGACUCACAACUAUCGC_AUCUAAUAUCGAAACUCCU ...((((((((.(........).))))))))..(((((((........))))))).................... ( -8.55 = -10.12 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:24 2011