| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,368,074 – 2,368,171 |
| Length | 97 |
| Max. P | 0.553629 |
| Location | 2,368,074 – 2,368,171 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.74 |
| Shannon entropy | 0.37911 |
| G+C content | 0.38760 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -13.01 |
| Energy contribution | -14.32 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2368074 97 - 27905053 ---------------------UGCCAGGAGAACGUAGACAGCGCCAGUGGUAUAAACGAUAUAAUUCACAGAUGAGCACAAAUAUUUGCGUAAUUAGUGAAUUUAACAGGCUCGAUUU ---------------------.(((.......(((..((.((....)).))....)))....(((((((.(((..(((........)))...))).))))))).....)))....... ( -18.30, z-score = -0.53, R) >droAna3.scaffold_13340 13589401 114 - 23697760 UGCCUUGGGACCCUGUGUUGUUAUUUUGCUUA-AUUGACAGCGCAAGUGCUAUAAACACAAUAAUUCACAGACGGGCAUAAAUAUUUGUGUAAUUACCGAACCCGAAAG---CAAUUU (((.(((((...(((((..((((((.((.(((-...(...((....)).)..))).)).)))))).))))).(((((((((....)))))).....)))..)))))..)---)).... ( -28.00, z-score = -1.62, R) >droEre2.scaffold_4770 2609010 96 - 17746568 ---------------------UGCCUGGAGGACACAG-CAAAGCCAGUGGCAUAAACGAUAUAAUUCACAGAUGAGCACAAAUAUUUGUGUAAUUAGUGAAUUUAACAGGCUCGAUUU ---------------------.(((((..........-....(((...)))...........(((((((.(((..((((((....)))))).))).)))))))...)))))....... ( -24.90, z-score = -2.63, R) >droYak2.chr3R 18281422 97 - 28832112 ---------------------UGCCUGGAGGACGCAGACAGCGACAGUAGUAUUAACGAUAUAAUGCACAGAUGAGCACAAAUAUUUGUGUAAUUUGUGAAUUUAACAGGCUCGUUUU ---------------------.(((((..((((((.....)))......((((((......))))))((((((..((((((....)))))).))))))...)))..)))))....... ( -25.80, z-score = -2.40, R) >droSec1.super_6 2461440 97 - 4358794 ---------------------UGCCUGGAGAACGCAGACAGCGCCAGUGGUAUAAACGAUAUAAUUCACAGAUGAGCACAAAUAUUUGUGUAAUUAGUGAAUUUAACACGCUCGAUUU ---------------------......(((..(((.....)))...(((((((.....))))(((((((.(((..((((((....)))))).))).)))))))...))).)))..... ( -21.00, z-score = -1.04, R) >droSim1.chr3R 2395927 95 - 27517382 ---------------------UGCCUGGAGAACGCAG--ACAGCCAGUGGUAUAAACGAUAUAAUUCACAGAUGAGCACAAAUAUUUGUGUAAUUAGUGAAUUUAACAGGCUCGAUUU ---------------------.(((((.....(((..--.......))).............(((((((.(((..((((((....)))))).))).)))))))...)))))....... ( -22.80, z-score = -2.17, R) >consensus _____________________UGCCUGGAGAACGCAGACAGCGCCAGUGGUAUAAACGAUAUAAUUCACAGAUGAGCACAAAUAUUUGUGUAAUUAGUGAAUUUAACAGGCUCGAUUU ......................(((((...................((.......)).....(((((((.(((..((((((....)))))).))).)))))))...)))))....... (-13.01 = -14.32 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:49 2011