| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,362,261 – 2,362,317 |
| Length | 56 |
| Max. P | 0.923403 |
| Location | 2,362,261 – 2,362,317 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 79.46 |
| Shannon entropy | 0.32628 |
| G+C content | 0.57767 |
| Mean single sequence MFE | -15.56 |
| Consensus MFE | -9.51 |
| Energy contribution | -10.82 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2362261 56 - 27905053 CUUCAUCCAUGGCCAUUUCCAUUUCCCCGUGCU--CCGUGGUCCGUGGACCAAUCGCC .....(((((((((((...(((......)))..--..)))).)))))))......... ( -15.40, z-score = -2.17, R) >droSim1.chr3R 2390155 50 - 27517382 CUUCGUCCAUGGCCAUUUCCAUUUUCCC--------CGUGGUCCGUGGACCAAUCGCC ....((((((((((((............--------.)))).))))))))........ ( -16.92, z-score = -3.51, R) >droSec1.super_6 2446581 50 - 4358794 CUUCGUCCAUGGCCAUUUCCAUUUUCCC--------CGUGGUCCGUGGACCAAUCGCC ....((((((((((((............--------.)))).))))))))........ ( -16.92, z-score = -3.51, R) >droYak2.chr3R 18275735 57 - 28832112 CUUCAUCCAUGGCCAUUUCCAUUUCCAUUUCCCCGUCGGAGGUCCUGG-CCAAUCGGC .........((((((...((...(((...........)))))...)))-)))...... ( -13.00, z-score = -0.31, R) >consensus CUUCAUCCAUGGCCAUUUCCAUUUCCCC________CGUGGUCCGUGGACCAAUCGCC ....((((((((((((.....................)))).))))))))........ ( -9.51 = -10.82 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:49 2011