| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,356,638 – 2,356,753 |
| Length | 115 |
| Max. P | 0.985700 |
| Location | 2,356,638 – 2,356,753 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 87.97 |
| Shannon entropy | 0.19113 |
| G+C content | 0.47444 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -25.40 |
| Energy contribution | -28.15 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2356638 115 + 27905053 GAACGAGGAGGUGGUGGACGAAAACUGUGCGAGAAGUGCGGGAGAUAUGGCUAAUUGAAAAGUUCAGCAUGUCGCCGCAUAGAAAGGAGACAGCAAAUGUUGUUCCAGACUCAAA ....(((...(((((.........(((..(.....)..)))..((((((.((((((....)))).))))))))))))).......((((.((((....))))))))...)))... ( -35.40, z-score = -2.92, R) >droSim1.chr3R 2384399 102 + 27517382 -------------GAGGAGGAAAACUGUGCGAGGAGUGCGGGAGAUAUGGCUAAUUGAAAAGUUCAGCAUGUCGCCGCAUAGGAAGGAGACAGCAAAUGUUGUUCCAGACUCAAA -------------(((..(((((((..(((.....((((((..((((((.((((((....)))).)))))))).)))))).....(....).)))...))).))))...)))... ( -34.80, z-score = -3.78, R) >droSec1.super_6 2441205 102 + 4358794 -------------GAGGAGGAAAACUGUGCGAGGAGUGCGGGAGAUAAGGCUAAUUGAAAAGUUCAGCAUGUCGCCGCAUAGGAAGGAGACAGCAAAUGUUGUUCCAGACUCAAA -------------(((..(((((((..(((.....((((((..((((..(((((((....)))).))).)))).)))))).....(....).)))...))).))))...)))... ( -33.00, z-score = -3.38, R) >droYak2.chr3R 18270722 109 + 28832112 ------GAGAGAGGAGAUGGAAAACUGUGCGAGGAGUGCGGGAUAUAUGGCUAAUUGAAAAGUUCAGCAUGUCGCCACAUAGGAAGGAGACUGCAAAUGUUGUUCCAGACUCAAA ------....(((....((((((((..(((.....(((.(.(((((...(((((((....)))).)))))))).))))......((....)))))...))).)))))..)))... ( -30.40, z-score = -2.04, R) >consensus _____________GAGGAGGAAAACUGUGCGAGGAGUGCGGGAGAUAUGGCUAAUUGAAAAGUUCAGCAUGUCGCCGCAUAGGAAGGAGACAGCAAAUGUUGUUCCAGACUCAAA .............(((..(((((((..(((.....((((((..((((((.((((((....)))).)))))))).)))))).....(....).)))...))).))))...)))... (-25.40 = -28.15 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:48 2011