| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,355,477 – 2,355,574 |
| Length | 97 |
| Max. P | 0.680536 |
| Location | 2,355,477 – 2,355,574 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Shannon entropy | 0.36643 |
| G+C content | 0.52883 |
| Mean single sequence MFE | -28.85 |
| Consensus MFE | -17.22 |
| Energy contribution | -17.95 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2355477 97 - 27905053 AGCAGCUGUGAGCCAACGCAAACACGCUUCGCAGACAGACGGGCGAGAAAAAGCCACGGAAAUAAAUUUCUGUGGUCAAUAUUACAGCAGGGGCGGG .((.((((((((((...((......))..((........)))))........((((((((((....)))))))))).....)))))))....))... ( -29.60, z-score = -1.92, R) >droSim1.chr3R 2383203 93 - 27517382 AGCAGCUGUGAGCCAACGCAAACACGCUCCG----CAGACGGGCGAGAAAAAGCCACGGAAAUAAAUUUCUGCGGUCAAUAUUACAGUGGCGGUGGG .((.(((((((......((......)).(((----(((((((((........))).))..........)))))))......))))))).))...... ( -28.60, z-score = -0.90, R) >droSec1.super_6 2440008 93 - 4358794 AGCAGCUGUGAGCCAACGCAAACACGCUCCG----CAGACGGGCGAGAAAAAGCCACGGAAAUAAAUUUCUGCGGUCAAUAUUACAGUGGCGGUGGG .((.(((((((......((......)).(((----(((((((((........))).))..........)))))))......))))))).))...... ( -28.60, z-score = -0.90, R) >droYak2.chr3R 18269499 91 - 28832112 AGCAGCUGUGAGCCAACACAAACACGCUCCG----CAGACGGGUGAGAAAAAGCCACGGAAAUAAAUUUCUGCGGUCAAUAUUACAGCGGUCGGG-- .((.(((((((.............(((.(((----....)))))).......(((.((((((....)))))).))).....))))))).))....-- ( -24.80, z-score = -0.89, R) >droEre2.scaffold_4770 2597043 91 - 17746568 AGCAGCUGUGAGCCAACACAAACACGCUCCG----CAGACGGGCGAGAAAAAGCCGCGGAAAUAAAUUUCUGCGGUCAAUAUUACAGCGGGCGGG-- .((.(((((((.............(((.(((----....)))))).......((((((((((....)))))))))).....)))))))..))...-- ( -35.00, z-score = -3.44, R) >droAna3.scaffold_13340 13577076 83 - 23697760 AGCCGCUGGAAGA----GCAAACAUCCCCGA----UGCGAGAACG-GAAAAACACACGGAAAUAAAUUUCUGUGGUCAGUGUAUCGAGCGGG----- ..((((((((.(.----.....).))).(((----((((...(((-......).((((((((....))))))))))...)))))))))))).----- ( -26.50, z-score = -2.40, R) >consensus AGCAGCUGUGAGCCAACGCAAACACGCUCCG____CAGACGGGCGAGAAAAAGCCACGGAAAUAAAUUUCUGCGGUCAAUAUUACAGCGGGGGGG__ ....(((((((.............(((.(((........)))))).......(((.((((((....)))))).))).....)))))))......... (-17.22 = -17.95 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:47 2011