Sequence ID | dm3.chr3R |
---|---|
Location | 2,336,211 – 2,336,308 |
Length | 97 |
Max. P | 0.637089 |
Location | 2,336,211 – 2,336,308 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 63.28 |
Shannon entropy | 0.60223 |
G+C content | 0.47857 |
Mean single sequence MFE | -26.61 |
Consensus MFE | -10.59 |
Energy contribution | -12.15 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.29 |
Mean z-score | -1.41 |
Structure conservation index | 0.40 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.637089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2336211 97 + 27905053 AGGUGUUGAGCCAGGAGAAUUACGCUCC-CAACUCCGCGCCAGCUGUGCAGUUGUUUCCCCUAACCUGGAAGGUAUGCCAACUCAAUCUACGGUCUCC- .(((((.(((...((((.......))))-...))).))))).((((((..((((.((((........))))((....))....)))).))))))....- ( -26.20, z-score = -0.29, R) >droYak2.chrU 8888291 89 - 28119190 UGGA-ACACUCCAGCAGAGAUACGAGCUAUGAUUGCCUCAAGGCAAUACGAUUCUCUUGGCCUUUCGGCAAUGCAAAUCUUGGUAAAACC--------- ((((-....))))((.(((((..(((...((((((((....)))))).))...)))...(((....))).......))))).))......--------- ( -22.10, z-score = -1.05, R) >droSec1.super_1989 535 97 - 3922 UGGACAUACUCCAGCAGAGAUACGAGCCAUGAUUGCCUCAAGGCAAUACGAUUCUUUUGGCCUUUCA-CAAGG-AAGUCUUGGUAAAACCAGCUCUGCU ((((.....))))((((((......((((..((((((....))))))..((((..((((........-)))).-.)))).))))........)))))). ( -29.24, z-score = -2.12, R) >droSim1.chr2L 20995059 97 + 22036055 UGGACAUACUCCAGCAGAGAUACGAGCUAUGAUUGCCUCAAGGCAAUAAGAUUCUUUUGGCCUUUCA-CAAAG-AAGUCUUGGUAACACCAGCUCUGCU ((((.....))))((((((............((((((....))))))((((((..((((........-)))).-.))))))((.....))..)))))). ( -28.90, z-score = -2.18, R) >consensus UGGACAUACUCCAGCAGAGAUACGAGCCAUGAUUGCCUCAAGGCAAUACGAUUCUUUUGGCCUUUCA_CAAGG_AAGUCUUGGUAAAACCAGCUCUGC_ .(((.....))).((((((............((((((....))))))..((((......((......))......)))).............)))))). (-10.59 = -12.15 + 1.56)
Location | 2,336,211 – 2,336,308 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 63.28 |
Shannon entropy | 0.60223 |
G+C content | 0.47857 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -11.30 |
Energy contribution | -12.11 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.38 |
Mean z-score | -1.41 |
Structure conservation index | 0.38 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.531272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2336211 97 - 27905053 -GGAGACCGUAGAUUGAGUUGGCAUACCUUCCAGGUUAGGGGAAACAACUGCACAGCUGGCGCGGAGUUG-GGAGCGUAAUUCUCCUGGCUCAACACCU -(....).........((((((((..(((........)))(....)...))).)))))((.(..((((..-((((.......))))..))))..).)). ( -31.50, z-score = -0.49, R) >droYak2.chrU 8888291 89 + 28119190 ---------GGUUUUACCAAGAUUUGCAUUGCCGAAAGGCCAAGAGAAUCGUAUUGCCUUGAGGCAAUCAUAGCUCGUAUCUCUGCUGGAGUGU-UCCA ---------((..(..((((((..(((...(((....)))...(((....(.((((((....)))))))....))))))..)))..)))...).-.)). ( -26.10, z-score = -1.43, R) >droSec1.super_1989 535 97 + 3922 AGCAGAGCUGGUUUUACCAAGACUU-CCUUG-UGAAAGGCCAAAAGAAUCGUAUUGCCUUGAGGCAAUCAUGGCUCGUAUCUCUGCUGGAGUAUGUCCA (((((((.(((((((.(((((....-.))))-.).)))))))...((..(((((((((....)))))).)))..))....)))))))(((.....))). ( -34.30, z-score = -2.85, R) >droSim1.chr2L 20995059 97 - 22036055 AGCAGAGCUGGUGUUACCAAGACUU-CUUUG-UGAAAGGCCAAAAGAAUCUUAUUGCCUUGAGGCAAUCAUAGCUCGUAUCUCUGCUGGAGUAUGUCCA (((((((.(((.((((..((((.((-((((.-((......))))))))))))((((((....))))))..)))).).)).)))))))(((.....))). ( -27.40, z-score = -0.88, R) >consensus _GCAGAGCUGGUUUUACCAAGACUU_CCUUG_UGAAAGGCCAAAAGAAUCGUAUUGCCUUGAGGCAAUCAUAGCUCGUAUCUCUGCUGGAGUAUGUCCA .((((((..((.....))..........(((((..(((((...............)))))..))))).............)))))).(((.....))). (-11.30 = -12.11 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:45 2011