| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,330,933 – 2,331,025 |
| Length | 92 |
| Max. P | 0.748936 |
| Location | 2,330,933 – 2,331,025 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.62 |
| Shannon entropy | 0.40262 |
| G+C content | 0.35270 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -8.75 |
| Energy contribution | -8.76 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.748936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2330933 92 + 27905053 -------CUGUAAUCC-GCAUUAGCGGAUGAAA--ACUAGAGACUUCGGCUUGUUAAAA-CAUAAAAUUCCAAAAACUAAAAACACAGAUGAAGGCUGUAGAA -------.....((((-((....))))))....--.(((.((.(((((.((((((....-.....................)))).)).))))).)).))).. ( -19.21, z-score = -2.32, R) >dp4.chr2 10742491 101 - 30794189 CUUCAGGAUGUAGACAAGAAUUAGUUGACAAAACUAAAAGAAAAUUGUACUCCUGAAUGUCAAAAAAAAGUGGAA--UAAAAGUGAAAGAAAACUGAGUGAAA .(((((((.((..((((...((((((.....)))))).......)))))))))))))..................--....(((........)))........ ( -14.30, z-score = -0.97, R) >droEre2.scaffold_4770 2576787 91 + 17746568 -------CUGUAAUCC-GCAUUAGUGGAUGAAA--AUAAGAGACUUGGGCUUGUAAAAA-CAUCAAAUUCCAAAA-CUAAAAACACAGCUGAAGGCUGUAGAA -------.....((((-((....))))))....--.....((..(((((.(((......-...)))..)))))..-))......(((((.....))))).... ( -16.50, z-score = -0.82, R) >droYak2.chr3R 18250601 92 + 28832112 -------CUGUAAUCC-GCAUUAGUGGAUGAAA--AUAAGAGACUUCGGCUUGUAAAAA-CAUAAAAUUCCAAAAAACAAAAACACAGCUGAAGGCUGUAGAA -------.....((((-((....))))))....--...(.((.(((((((((((.....-......................))).)))))))).)).).... ( -18.43, z-score = -2.11, R) >droSec1.super_6 2417455 92 + 4358794 -------CUGUAAUCC-GCAUUAGCGGAUGAAA--ACAAGAGACUUCGGCUUGUAAAAA-CAUAAAAUUCCAAAAACUAAAAACACAGCUGAAGGCUCUGGAA -------.(((.((((-((....))))))....--)))((((.(((((((((((.....-......................))).)))))))).)))).... ( -25.03, z-score = -4.23, R) >droSim1.chr3R 2359512 92 + 27517382 -------CUGUAAUCC-GCAUUAGCGGAUGAAA--ACAAGAGACUUCGGCUUGUAAAAA-CAUAAAAUUCCAAAAACUAAAAACACAGCUGAAGGCUGUAGAA -------.(((.((((-((....))))))....--)))(.((.(((((((((((.....-......................))).)))))))).)).).... ( -20.93, z-score = -2.82, R) >consensus _______CUGUAAUCC_GCAUUAGCGGAUGAAA__ACAAGAGACUUCGGCUUGUAAAAA_CAUAAAAUUCCAAAAACUAAAAACACAGCUGAAGGCUGUAGAA ............((((.((....))))))..............(((((((((((............................))).))))))))......... ( -8.75 = -8.76 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:41 2011