| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,290,150 – 2,290,264 |
| Length | 114 |
| Max. P | 0.556962 |
| Location | 2,290,150 – 2,290,264 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 99.42 |
| Shannon entropy | 0.00806 |
| G+C content | 0.40936 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -25.30 |
| Energy contribution | -25.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.88 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2290150 114 + 27905053 UCUGAUUCGGUUUUUGCAUUCAAAUUUAAAUAUAAAUUGACACGUGCCAGCCUUCGCAAACAAUCAGGACACGCUCUUAGCCAAAAAAGGUCCGAAAGUGGGGAAAUCGAAUCU ...((((((((((((.((((..((((((....))))))....((..((.((....))...............((.....)).......))..))..)))).)))))))))))). ( -25.30, z-score = -0.91, R) >droSec1.super_6 2376634 114 + 4358794 UCUGAUUCGGUUUUUGCAUUCAAAUUUAAAUAUAAAUUGACACGUGCCAGCCUUCGCAAACAAUCAGGACACGCUCUCAGCCAAAAAAGGUCCGAAAGUGGGGAAAUCGAAUCU ...((((((((((((.((((..((((((....))))))....((..((.((....))...............((.....)).......))..))..)))).)))))))))))). ( -25.30, z-score = -0.87, R) >droSim1.chr3R_random 231029 114 + 1307089 UCUGAUUCGGUUUUUGCAUUCAAAUUUAAAUAUAAAUUGACACGUGCCAGCCUUCGCAAACAAUCAGGACACGCUCUCAGCCAAAAAAGGUCCGAAAGUGGGGAAAUCGAAUCU ...((((((((((((.((((..((((((....))))))....((..((.((....))...............((.....)).......))..))..)))).)))))))))))). ( -25.30, z-score = -0.87, R) >consensus UCUGAUUCGGUUUUUGCAUUCAAAUUUAAAUAUAAAUUGACACGUGCCAGCCUUCGCAAACAAUCAGGACACGCUCUCAGCCAAAAAAGGUCCGAAAGUGGGGAAAUCGAAUCU ...((((((((((((.((((..((((((....))))))....((..((.((....))...............((.....)).......))..))..)))).)))))))))))). (-25.30 = -25.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:36 2011