| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,270,222 – 2,270,319 |
| Length | 97 |
| Max. P | 0.918606 |
| Location | 2,270,222 – 2,270,319 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.57 |
| Shannon entropy | 0.25800 |
| G+C content | 0.52165 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -24.90 |
| Energy contribution | -25.06 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.918606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2270222 97 - 27905053 UGAGUGCGAGCUGGAACUCGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGACAAACGCAGCAACCACUUCCGGCUCGAGUUCUGAAUCCGAU .(((..(((((((((..((((.(((((((.(((......))).))).)))).)))).......((......)))))))))))..))).......... ( -33.80, z-score = -2.24, R) >droSim1.chr3R 2297220 97 - 27517382 CGAGUGAGAGCUGGAACUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCCCUUCCGGCUCGAAUUCUGAAUCCGAU .((((..(((((((((..((..(((((((.(((......))).))).))))...(.....).......))..)))))))))..)))).......... ( -31.80, z-score = -2.04, R) >droSec1.super_6 2357020 97 - 4358794 CGAGUGAGAGCUGGACCUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCUCUACCGGCUCGAAUUCUGAAUCCGAU .((((..(((((((....((..(((((((.(((......))).))).))))...(.....).......))....)))))))..)))).......... ( -28.70, z-score = -1.26, R) >droYak2.chr3R 18191172 97 - 28832112 CGAGUUAAAGCUGGAACUUGACGAUGAGGAUCCAUUAUGGGAACCUCUAUCUUCGCACAACACGUCAACCUUUUUCGGCUCAGAUUCCGAAUCCGAU .(((((..((((((((.((((((((((((.(((......))).)))).)))...(.....)..)))))....))))))))..))))).......... ( -26.70, z-score = -1.88, R) >droEre2.scaffold_4770 2516523 97 - 17746568 UGAGUUAAGGUUGGAACUGGAUGAUGAGGAUCCGAUAUAGGAACCUCCAUCCUCGCCCAACACUUCAACCUCUUCCGGCUCAGAUUCCGAGUCCGAU .(((((((((((((....(((((..((((.(((......))).)))))))))....))))).))).)).)))...((((((.......))).))).. ( -34.00, z-score = -2.50, R) >consensus CGAGUGAGAGCUGGAACUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCUCUUCCGGCUCGAAUUCUGAAUCCGAU .((((..(((((((((...((.(((((((.(((......))).)))).))).))(.....)...........)))))))))..)))).......... (-24.90 = -25.06 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:35 2011