| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,264,511 – 2,264,609 |
| Length | 98 |
| Max. P | 0.789970 |
| Location | 2,264,511 – 2,264,609 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 64.92 |
| Shannon entropy | 0.73524 |
| G+C content | 0.40045 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -9.53 |
| Energy contribution | -9.55 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2264511 98 - 27905053 CCUUGAGGGGCGGAAUUUCGCUGACGUGCAUAAUGGUGCCAAUGUCACUGAGGUUUCU-GCAAGAAUUGAAUUUGAGUAAGUAUAAAUGUAUAAAAAAC-------------- ((.....))(((((((((((.((((((((((....))))..)))))).))))).))))-))......................................-------------- ( -21.60, z-score = -0.78, R) >droSim1.chr3R 2291534 97 - 27517382 CCUUGAGGGGCGGAAUUUCGCUGACGUGCAUAAUGGUGCCGAUGUCACUGAGGUUUCU-GCAAGAAAUGAAUUUGAGUGAGUAUAAAUGUAUAAAAAC--------------- ((.....))(((((((((((.((((((((((....))))..)))))).))))).))))-)).....................................--------------- ( -21.60, z-score = -0.70, R) >droSec1.super_6 2351347 97 - 4358794 CCUUGAGGGGCGGAAUUUCGCUGACGUGCAUAAUGGUGCCGAUGUCACUGAGGUUUCU-GCAAGAAAUGAAUUUGAGUGAGUAUAAAUGUAUAAAAAC--------------- ((.....))(((((((((((.((((((((((....))))..)))))).))))).))))-)).....................................--------------- ( -21.60, z-score = -0.70, R) >droEre2.scaffold_4770 2510856 96 - 17746568 CCUUAAGGGGCGGAAUUUCGCUGACGUGCAUUAUGGUGCCAAUGUCACUGAGGUUUCU-GAAAGAAAUUAAUUUGCGUGAG--AAACUGUAUAGAAAAC-------------- ((.....))((((..((((((((((((((((....))))..))))))....((((((.-....)))))).......)))))--)..)))).........-------------- ( -21.30, z-score = -0.62, R) >droAna3.scaffold_13340 13490440 111 - 23697760 CCUUGAGUGGCGGAAUCUCGCUUACGUGCAUGAUGGUGCCAAUGUCACUGAGGUUCCU-GCAAGGACAAAAAC-UAUUACUUUCUAAUCCUUUAGUGUAAAAGUUUGUAAGAU (((((......(((((((((.(.((((((((....))))..)))).).))))))))).-.)))))....((((-(.((((...((((....)))).)))).)))))....... ( -29.40, z-score = -1.65, R) >droPer1.super_3 4513912 104 + 7375914 CCUUCAGUGGCGGUAUUUCGCUCACAUGCAUAAUGGUGCCGAUAUCCGAGAGGUUUCUACAACAGAAAGGCGAACAAAGAUUAGGAUUAAAGUACUGGAAGGUC--------- (((((.(((((((....)))).))).........(((((....((((......(((((.....)))))(.....)........))))....))))).)))))..--------- ( -25.10, z-score = -0.64, R) >dp4.chr2 10677009 104 + 30794189 CCUUCAGUGGCGGUAUUUCGCUCACAUGCAUAAUGGUGCCGAUAUCCGAGAGGUUUCUACAACAGAAAGGUGAACAAAGAUUAGGAUUAAAGUACUGGAAAGUC--------- ..((((((((((.((((..((......))..)))).))))...((((......(((((.....))))).(....)........))))......)))))).....--------- ( -22.00, z-score = 0.07, R) >droYak2.chr3R 18185665 100 - 28832112 CCUUAAGGGGCGGAAUUUCGCUGACGUGCAUGAUGGUGCCAAUGUCACUGAGGUUUCUAAAAAGCAAUUAAUUUGAGUUAG--AAAAUGUAUAAAAAAAAAC----------- (((((...(((((....)))))(((((((((....))))..)))))..)))))(((((((....(((.....)))..))))--)))................----------- ( -22.20, z-score = -1.56, R) >droWil1.scaffold_181130 13097734 85 + 16660200 CCUUCAAUGGUGGUAUUUCGCUAACAUGCAUUAUAGUGCCAAUAUCACUUAGAUUUCU-GAAAAAUAA--AUGGCAUUAGA-UCACAUA------------------------ .........(((((.....((......))....((((((((.......((((....))-)).......--.)))))))).)-))))...------------------------ ( -17.76, z-score = -1.62, R) >droVir3.scaffold_13047 17425722 96 - 19223366 CCUUCAGGGGCGGUAUUUCGCUCACAUGCAUAAUCGUGCCAAUGUCGCUGAGGUUUCU-GUGGAAUAAAUAUAUUAUCAGA-UAAAUCACAUUAUUCC--------------- .((((((((((((....))))))((((((((....))))..))))..))))))..(((-(...((((....))))..))))-................--------------- ( -22.50, z-score = -1.23, R) >droMoj3.scaffold_6540 19905413 97 + 34148556 CCUUCAGCGGCGGUAUUUCGCUCACAUGCAUAAUGGUGCCAAUAUCAGAAAGGUUUCUGUAAU--CAAGAUGAA-AUCGUUUUCAAUUAAA---UUGGAAAAU---------- ..((((.(((((.((((..((......))..)))).)))).....(((((....)))))....--...).))))-....((((((((...)---)))))))..---------- ( -19.90, z-score = -0.78, R) >droGri2.scaffold_14906 12482869 92 - 14172833 CCUUCAGUGGCGGUAUUUCGCUAACAUGCAUUAUUGUGCCAAUAUCGCUGAGGUUUCU-GUGAGAAAGAGAACGUAUUAUU-----AUAUUUUAGUUU--------------- .((((((((((((....))))......((((....))))......))))))))(((((-.......)))))..........-----............--------------- ( -20.20, z-score = -0.76, R) >consensus CCUUCAGGGGCGGAAUUUCGCUGACAUGCAUAAUGGUGCCAAUGUCACUGAGGUUUCU_GAAAGAAAAGAAUUUGAGUGAGUAAAAAUAUAUAAAUAA_______________ ((((....(((((....))))).....((((....))))..........))))............................................................ ( -9.53 = -9.55 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:33 2011