| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,257,753 – 2,257,878 |
| Length | 125 |
| Max. P | 0.961216 |
| Location | 2,257,753 – 2,257,878 |
|---|---|
| Length | 125 |
| Sequences | 6 |
| Columns | 128 |
| Reading direction | reverse |
| Mean pairwise identity | 71.48 |
| Shannon entropy | 0.54880 |
| G+C content | 0.50635 |
| Mean single sequence MFE | -39.06 |
| Consensus MFE | -24.28 |
| Energy contribution | -25.90 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2257753 125 - 27905053 AACAAGGAGGUGAUGGAAUUGGGCCCAGACCCAACCAAAAGUCAUUUCGACCCGACUUUUACAUCCUUUGCGGGUGGUUGAGUUGGAAAAGCCAUCACCAGUGCCCAAAUAUCAUCCCCAAGCGC--- ........((((((((..(((((......)))))......(((.....)))(((((((...(((((.....)))))...))))))).....)))))))).((((.................))))--- ( -39.43, z-score = -1.73, R) >droSim1.chr3R 2284776 125 - 27517382 AACGAGGAGGUGCUAGAAUUGGGCCCAGACCCAACCAUAAGUCAUUUCGACCCGACUUUUCCAUUCUUUGCGGGUGGUUGGGUCGGAAAAACCAUCAUCAGUGCCCAAAUAUCAUCCCCAAGCGC--- .....((.((((.((...((((((.(.(((((((((((..(((.....)))(((.(.............)))))))))))))))((.....)).......).)))))).)).)))).))......--- ( -42.42, z-score = -2.34, R) >droSec1.super_6 2344628 125 - 4358794 AACGAGGAGGUGCUAGAAUUGGGCUCAGACCCAACCAUAAGUCAUUUCGACCCGACUUUUCCAUUCUUUGCGGGUGGUUGGGUCGGAAAAACCAUCACCAGUGCCCAAAUAUCAUCCCCAAGCGC--- .....((.((((.((...((((((.(.(((((((((((..(((.....)))(((.(.............)))))))))))))))((.....)).......).)))))).)).)))).))......--- ( -43.22, z-score = -2.59, R) >droYak2.chr3R 18179103 125 - 28832112 AACGAGGUGGUGAUAGAAUUGGACCCAGACCCAAGCAAAAGUCUUUUCGACUCGAUUUAUCCAUCCUGUGCGGGUGGUUGGGUUGGAAAAGCCAUCUCCAGUGCCCAAAUAUCAUCCCCAAACGC--- .....((.(((((((..((((((....(((((((.....((((.....))))........((((((.....)))))))))))))((.....))...)))))).......))))))).))......--- ( -36.40, z-score = -0.74, R) >droEre2.scaffold_4770 2503589 125 - 17746568 AACGAGGUGGUGAUAGAAUGGCGGCCAGACCCAACCAAAAGUCGCUUCGACCCAGCUUUUCCAUCCUUUGCGGGUGGUUGGGUUGGAAAAGCCAUCAGCGGUGCCCAAAUAUCAUCCCCAAACGC--- .....((.(((((((....((((.((.(((..........)))((((....(((((((..((((((.....))))))..)))))))..)))).......))))))....))))))).))......--- ( -43.10, z-score = -1.16, R) >droAna3.scaffold_13340 13484461 117 - 23697760 -----------GACCAAAAAAUGCGAACGUUCAAGGAAAAGUCACUCUUUUGAGCUUCGUUUUUCGGCUUCCUUUUGUUGGGUUUUUAAGGGUGGUGGGCUCUCUGACCUCUCGACCUCAACCCACAC -----------..((.((((..(((((.(((((((((........)).)))))))))))))))).))........(((.(((((.....(((.(((.((....)).))).)))......)))))))). ( -29.80, z-score = 0.02, R) >consensus AACGAGGAGGUGAUAGAAUUGGGCCCAGACCCAACCAAAAGUCAUUUCGACCCGACUUUUCCAUCCUUUGCGGGUGGUUGGGUUGGAAAAGCCAUCACCAGUGCCCAAAUAUCAUCCCCAAGCGC___ .....((.(((((((...((((((.(..............(((.....)))(((((((..((((((.....))))))..)))))))..............).)))))).))))))).))......... (-24.28 = -25.90 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:32 2011