| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,256,411 – 2,256,505 |
| Length | 94 |
| Max. P | 0.669950 |
| Location | 2,256,411 – 2,256,505 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.17 |
| Shannon entropy | 0.46445 |
| G+C content | 0.53062 |
| Mean single sequence MFE | -17.02 |
| Consensus MFE | -8.04 |
| Energy contribution | -8.57 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.669950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2256411 94 + 27905053 GAAGCCAGGGCAUAAAAGACGACUAGUCGAC----AGUCGUCUGUGUUAAUAAACCACCGCCCCAUGACCACCAAGAGCGG--CACCAUCCCGUCAUCAG ...(((.((((.....((((((((.(....)----))))))))(((.........))).))))..((.....)).....))--)................ ( -23.60, z-score = -2.23, R) >droSim1.chr3R 2283486 87 + 27517382 GAAGCCAGAGCAUAAAAGACGUCGACU--------AGUCGUCUGUGUUAAUAAACC---GCCCCAUGACCACCAAGAGCGG--CACCAUCCCGACAUCAG ...(((..(((((...(((((.(....--------.).))))))))))........---((..(.((.....)).).))))--)................ ( -16.00, z-score = -1.17, R) >droSec1.super_6 2343300 87 + 4358794 GAAGCCAGAGCAUAAAAGACGUCGACU--------AGUCGUCUGUGUUAAUAAACC---GCCCCAUGACCACCAAGAGCGG--CACCAUCCCGUCAUCAG ...(((..(((((...(((((.(....--------.).))))))))))........---((..(.((.....)).).))))--)................ ( -16.00, z-score = -1.08, R) >droYak2.chr3R 18177386 97 + 28832112 GAAGCCAGAGCAUUAAAGACGACGACUGACUGACUAGUCGUCUGUGUUAAUAAACC---GCCCCAUGACCACCAAGAUCAGAGCCCCGUUCCACCAUCAG .......(((((((((..((((((((((......)))))))).)).))))).....---((....(((.(.....).)))..))...))))......... ( -18.10, z-score = -1.77, R) >droEre2.scaffold_4770 2502351 87 + 17746568 GAAGCCAGAGCACAAAAGACGACGACU--------AGUCGUCUGUGUUAAUAAACC---GCCCCAUGACCACCAAGAGCAG--CACCAUCCCACCAUCAG ...((...((((((...((((((....--------.))))))))))))........---((..(.((.....)).).)).)--)................ ( -16.90, z-score = -3.22, R) >droPer1.super_3 4501392 76 - 7375914 ----------GAAUAGCGGCAACGACU--------AGUCGUCUGUCGUGUUGAAAC--CUUCCCCCGA--ACCCAAACCAA--ACCAACCCAACCACCAC ----------.....((((((((((..--------..)))).))))))........--..........--...........--................. ( -11.50, z-score = -1.08, R) >consensus GAAGCCAGAGCAUAAAAGACGACGACU________AGUCGUCUGUGUUAAUAAACC___GCCCCAUGACCACCAAGAGCAG__CACCAUCCCACCAUCAG ........(((((...(((((((.............)))))))))))).................................................... ( -8.04 = -8.57 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:31 2011