| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,245,102 – 2,245,183 |
| Length | 81 |
| Max. P | 0.912481 |
| Location | 2,245,102 – 2,245,183 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 91.15 |
| Shannon entropy | 0.15060 |
| G+C content | 0.46207 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -18.08 |
| Energy contribution | -18.48 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2245102 81 + 27905053 AAUACUAGUGCUGCCCACUGUGGAUUACCACGUA----AGUCCGCGGGAUAAGAUUCCAUUAAAUCGGCAGAUGGUAAGCACACA .......(((((..(((((((.((((....(((.----.....)))(((......)))....)))).)))).)))..)))))... ( -27.30, z-score = -3.04, R) >droYak2.chr3R 18165686 80 + 28832112 CAAACUAGUGCUGCCCACUGUAGAUUACCACGUA----AGUCAG-GGGAUAAGAUUCCAUUAAAACGCCAGAUGGGAAGCACACA .......(((((.(((((((..(....((((...----.))..)-)(((......))).......)..))).)))).)))))... ( -24.40, z-score = -3.02, R) >droEre2.scaffold_4770 2488535 80 + 17746568 GAAACUAGUGCUGCCCACUGUAGAUUACCACGUA----AGUCAG-GGGAUAAGAUUCCAUUAAAACGCCAGAUGGGAAGCACACA .......(((((.(((((((..(....((((...----.))..)-)(((......))).......)..))).)))).)))))... ( -24.40, z-score = -3.00, R) >droSec1.super_6 2331897 85 + 4358794 AAAACUAGUGCUGCCCACUGUGGAUUACCACGUAUGUAAGUCCGGGGGAUAAGAUUCCAUUAAAUCGCCAGAUGGUAAGCACAAA .......(((((..((((((..((((.((.((.((....)).))))(((......)))....))))..))).)))..)))))... ( -24.20, z-score = -1.66, R) >droSim1.chr3R 2272120 81 + 27517382 AAAACUAGUGCUGCCCACUGUGGAUUACCCCGUA----AGUCCGGGGGAUAAGAUUCCAUUAAAUCGCCAGAUGGUAAGCACAAA .......(((((..((((((..((((..((((..----....))))(((......)))....))))..))).)))..)))))... ( -27.90, z-score = -3.15, R) >consensus AAAACUAGUGCUGCCCACUGUGGAUUACCACGUA____AGUCCG_GGGAUAAGAUUCCAUUAAAUCGCCAGAUGGUAAGCACACA .......(((((..((((((((((((............))))))..(((......)))..........))).)))..)))))... (-18.08 = -18.48 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:31 2011