| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,472,669 – 6,472,767 |
| Length | 98 |
| Max. P | 0.892026 |
| Location | 6,472,669 – 6,472,767 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Shannon entropy | 0.36480 |
| G+C content | 0.52641 |
| Mean single sequence MFE | -31.94 |
| Consensus MFE | -24.24 |
| Energy contribution | -24.08 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.892026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6472669 98 - 23011544 ACGCUGCUGCUUGGCGAAUUGGCCAAGCAGCGAAAAUCCGAUUGAAAUUGCUGCAGUCCCAGUAGCCGUAUCAGCCGUGUAAUCAAGAGAGCCGACCG-------------- ..(((((((((((((......))))))))))((..(..((..(((.((.(((((.......))))).)).)))..))..)..)).....)))......-------------- ( -35.10, z-score = -2.98, R) >droEre2.scaffold_4929 15381244 94 - 26641161 ---ACGCUGCUUGGCAAAUUGGCCCAGCAGCGAAAAUCCGAUUGGGAUUGCUGCAGCUCCAGUAGCCGUAUC-GCUA-ACAACAAAGCCGUGUAAUAAA------------- ---.(((((((.(((......))).)))))))..(((((.....)))))(((((.......)))))..(((.-(((.-.......))).))).......------------- ( -30.30, z-score = -1.37, R) >droYak2.chr2L 15880022 104 + 22324452 ---ACGCUGCUUGGCAAAUUGGCCCAGCGGCGAAAAUCCGAUUGGAAUUGCUGCAGCUCCAGUAGCCGUAUC-GCUA-A---CAAAGCCGUGUAAUCAAGAAAGCCAGUUGA ---.(((((((.(((......))).)))))))......(((((((.(((((.((.(((....((((......-))))-.---...))).)))))))........))))))). ( -34.90, z-score = -1.63, R) >droSec1.super_5 4521882 98 - 5866729 ACGCUGCUGCUUGGCAAAUUGGCCCAGCAGCGAAAAUCAGAUUGGAAUUGCUGCAGCCCCAGUAGCCGUAUCAGCCAUGUAAUCAAGAGAGUCGACCG-------------- ..(((((((((.(((......))).))))))........((((((...(((((......))))).))).)))))).......................-------------- ( -27.20, z-score = -0.21, R) >droSim1.chr2L 6263102 98 - 22036055 ACGCUGCUGCUUGGCAAAUUGGCCCAGCAGCGAAAAUCCGAUUGGAAUUGCUGCAGCCCCAGUAGCCGUAUCAGCCGUGUAAUCAAGAGAGUCGACCG-------------- ((((.((((..((((..(((((..(.(((((((...(((....))).))))))).)..))))).))))...)))).))))..................-------------- ( -32.20, z-score = -1.69, R) >consensus ACGCUGCUGCUUGGCAAAUUGGCCCAGCAGCGAAAAUCCGAUUGGAAUUGCUGCAGCCCCAGUAGCCGUAUCAGCCAUGUAAUCAAGAGAGGCGACCG______________ ....(((((((.(((......))).))))))).........((((.((.(((((.......))))).)).))))...................................... (-24.24 = -24.08 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:22 2011