| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,239,062 – 2,239,194 |
| Length | 132 |
| Max. P | 0.901557 |
| Location | 2,239,062 – 2,239,166 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.05 |
| Shannon entropy | 0.42627 |
| G+C content | 0.34910 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -12.18 |
| Energy contribution | -13.86 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2239062 104 - 27905053 -AUCGUGCCACAGAGCCGUGAAUGAAAGAAAUA-AUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUUUUCCUAAGGAUUCCUUAUCUAUUCCAUUUUAUUCC -....((((....(((((((.((((((......-......))))))..))))))).......)))).........(((((...))))).................. ( -22.50, z-score = -1.25, R) >droAna3.scaffold_13340 13468676 102 - 23697760 UAUCAUUUU-UGAGGCUACAUUUAAUUGAAAAGUAUUAAAUUGUAAGACACUGAAAGAAAAAAACCACUAAACCUAACAAAAAAAACCUCCAUAAGAUCUUAG--- .....((((-(.((.(((((((((((........)))))).))).))...)).))))).............................................--- ( -7.80, z-score = 0.31, R) >droEre2.scaffold_4770 2484826 104 - 17746568 -AUCGUGCCACAUAGCCGUGAAUGAAUGAAAUA-AUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUUUUCCUAAGGAUUCCUUAUCCAUUCCAUUUUAUUCC -....((((...((((((((.....(((((((.-.....)))))))..))))))))......))))............((((.....))))............... ( -25.70, z-score = -2.40, R) >droSec1.super_6 2328206 104 - 4358794 -AUCGUGCCACAUAGCCGUGAAUGAAAGAAAUA-AUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUUUUCCUAAGGAUUCCUUAUCUAUUCCAUUUUAUUCC -....((((...((((((((.((((((......-......))))))..))))))))......)))).........(((((...))))).................. ( -24.00, z-score = -1.95, R) >droSim1.chr3R 2267438 104 - 27517382 -AUCGUGCCACAUAGCCGUGAAUGAAAGAAAUA-AUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUUUUCCUAAGGAUUCCUUAUCUAUUCCAUUUUAUUCC -....((((...((((((((.((((((......-......))))))..))))))))......)))).........(((((...))))).................. ( -24.00, z-score = -1.95, R) >consensus _AUCGUGCCACAUAGCCGUGAAUGAAAGAAAUA_AUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUUUUCCUAAGGAUUCCUUAUCUAUUCCAUUUUAUUCC .....((((...((((((((.((((((.............))))))..))))))))......))))........................................ (-12.18 = -13.86 + 1.68)
| Location | 2,239,097 – 2,239,194 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 97.77 |
| Shannon entropy | 0.03540 |
| G+C content | 0.38918 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -20.52 |
| Energy contribution | -21.02 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2239097 97 - 27905053 CAGAAACUUUUACCUAUCUGUACUUCUCAUCGUGCCACAGAGCCGUGAAUGAAAGAAAUAAUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUU ....((((((..(((.(((((((........)))).....(((((((.((((((............))))))..))))))))))..)))..)))))) ( -24.10, z-score = -2.29, R) >droEre2.scaffold_4770 2484861 97 - 17746568 CAGAAACUUUUACCUAUCUCUACUUCUCAUCGUGCCACAUAGCCGUGAAUGAAUGAAAUAAUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUU ................................((((...((((((((.....(((((((......)))))))..))))))))......))))..... ( -21.80, z-score = -1.93, R) >droSec1.super_6 2328241 97 - 4358794 CAGAAACUUUUACCUAUCUCUACUCCUCAUCGUGCCACAUAGCCGUGAAUGAAAGAAAUAAUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUU ................................((((...((((((((.((((((............))))))..))))))))......))))..... ( -21.90, z-score = -2.01, R) >droSim1.chr3R 2267473 97 - 27517382 CAGAAACUUUUACCUAUCUCUACUCCUCAUCGUGCCACAUAGCCGUGAAUGAAAGAAAUAAUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUU ................................((((...((((((((.((((((............))))))..))))))))......))))..... ( -21.90, z-score = -2.01, R) >consensus CAGAAACUUUUACCUAUCUCUACUCCUCAUCGUGCCACAUAGCCGUGAAUGAAAGAAAUAAUGUAAUUUUAUGCCACGGCUAGAAAAGGGCAAAGUU ................................((((...((((((((.((((((............))))))..))))))))......))))..... (-20.52 = -21.02 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:30 2011