| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,233,726 – 2,233,827 |
| Length | 101 |
| Max. P | 0.630679 |
| Location | 2,233,726 – 2,233,827 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.08 |
| Shannon entropy | 0.24898 |
| G+C content | 0.36016 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -11.52 |
| Energy contribution | -11.96 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2233726 101 - 27905053 AAUAAACAUAGUUGUCAAACGACUGCUUAUAAAAUAUC-----------CACUUUAAAUUUAUAGCCCUUAUAUGACACUUGUCUAAGGGCGAGCGCCCACUGUCUUCCCAC .........(((((.....)))))((((.((((.....-----------...))))........(((((((...(((....))))))))))))))................. ( -20.00, z-score = -2.36, R) >droSim1.chr3R 2261157 101 - 27517382 AAUAAACAUAGUUGUCAAACGACUGCUUAUAAAUUAUC-----------CACUUUAAAUUUAAAGCCCUUAUAUGACACUUUUGUUUGGGCGAACGCCCAUUGUCUUCCCAC ...(((((.(((.((((.(..(..((((.((((((...-----------.......))))))))))..)..).)))))))..)))))((((....))))............. ( -20.60, z-score = -3.06, R) >droSec1.super_6 2318838 101 - 4358794 AAUAAACAUAAAUGUCAAACGACUGCUUAUAAAUUAUC-----------CACUUUAAAUUUAAAGCCCUUAUAUGACACUUUUGUUUGGGCGAACGCCCAUUGUCUUCCCAC ...(((((.((.(((((.(..(..((((.((((((...-----------.......))))))))))..)..).))))).)).)))))((((....))))............. ( -20.50, z-score = -3.60, R) >droYak2.chr3R 18156706 111 - 28832112 AAUAAUAAUAGUUGUCAAACGACUGCUUAUAAAUUAUCAAAUAGAAGUCCACUUUAAUUUAAU-GACCUUAUAUGGCACUUUUGGUAGGGCGAACGCCCACUGUCUUCCCAA ..........(((....)))((((((((((((.((((.((((.((((....)))).)))).))-))..))))).)))).....(((.((((....))))))))))....... ( -22.30, z-score = -1.53, R) >droEre2.scaffold_4770 2479499 111 - 17746568 AAUAAACAUAGUUGUCACACGACUGUUUAUAAAUUAUCGAAUAGAAGUUCACUUUAAAUUAAU-GCCCUUAUAUGACACUUUUGUUAGGGCGAACGCCCACUGUCUUCCCAC .(((((((..((((.....))))))))))).........((((((((((((...(((......-....)))..))).))))))))).((((....))))............. ( -21.00, z-score = -1.72, R) >consensus AAUAAACAUAGUUGUCAAACGACUGCUUAUAAAUUAUC___________CACUUUAAAUUUAUAGCCCUUAUAUGACACUUUUGUUAGGGCGAACGCCCACUGUCUUCCCAC ........((((((.....)))))).................................................(((((....)...((((....))))..))))....... (-11.52 = -11.96 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:28 2011