| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,137,178 – 2,137,233 |
| Length | 55 |
| Max. P | 0.978798 |
| Location | 2,137,178 – 2,137,233 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 87.88 |
| Shannon entropy | 0.16696 |
| G+C content | 0.30692 |
| Mean single sequence MFE | -12.60 |
| Consensus MFE | -8.95 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.19 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.978798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2137178 55 + 27905053 UAAUCUUUUAAGCAUUUUAUGCCGACAUAAAGGGGCUUAAAAGAAACAGAAAAUU ...((((((((((.(((((((....)))))))..))))))))))........... ( -16.70, z-score = -5.03, R) >droSec1.super_6 2222988 53 + 4358794 AAAUCUUUAAAGCUAUUU--GCAGACAUAAAGGGGCUUAAAAGGAACUGGAAAUU ...(((((.(((((.(((--(......))))..))))).)))))........... ( -8.40, z-score = -1.19, R) >droSim1.chr3R 2131089 55 + 27517382 AAAUCUUUAAAGCUAUUUAUGCAGACAUAAAGGGGCUUAAAAGGAACUGGAAAUU ...(((((.(((((.((((((....))))))..))))).)))))........... ( -12.70, z-score = -3.35, R) >consensus AAAUCUUUAAAGCUAUUUAUGCAGACAUAAAGGGGCUUAAAAGGAACUGGAAAUU ...(((((.((((..((((((....))))))...)))).)))))........... ( -8.95 = -9.40 + 0.45)
| Location | 2,137,178 – 2,137,233 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 87.88 |
| Shannon entropy | 0.16696 |
| G+C content | 0.30692 |
| Mean single sequence MFE | -9.57 |
| Consensus MFE | -7.60 |
| Energy contribution | -8.27 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2137178 55 - 27905053 AAUUUUCUGUUUCUUUUAAGCCCCUUUAUGUCGGCAUAAAAUGCUUAAAAGAUUA ...........((((((((((...((((((....))))))..))))))))))... ( -15.10, z-score = -4.42, R) >droSec1.super_6 2222988 53 - 4358794 AAUUUCCAGUUCCUUUUAAGCCCCUUUAUGUCUGC--AAAUAGCUUUAAAGAUUU ............((((.((((.......((....)--)....)))).)))).... ( -3.80, z-score = -0.02, R) >droSim1.chr3R 2131089 55 - 27517382 AAUUUCCAGUUCCUUUUAAGCCCCUUUAUGUCUGCAUAAAUAGCUUUAAAGAUUU ............((((.((((...((((((....))))))..)))).)))).... ( -9.80, z-score = -3.30, R) >consensus AAUUUCCAGUUCCUUUUAAGCCCCUUUAUGUCUGCAUAAAUAGCUUUAAAGAUUU ............((((.((((...((((((....))))))..)))).)))).... ( -7.60 = -8.27 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:23 2011