| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,132,754 – 2,132,845 |
| Length | 91 |
| Max. P | 0.995076 |
| Location | 2,132,754 – 2,132,845 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 58.39 |
| Shannon entropy | 0.79041 |
| G+C content | 0.41563 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -7.03 |
| Energy contribution | -8.82 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.65 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.995076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2132754 91 + 27905053 GAUCACGCAACUAAAACACUGAUAGUUGGUUCCAGUAACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUCAAAC----- ......((((........(((((((((((((.....)))))))))))))...........((((....))))))))...............----- ( -23.00, z-score = -4.35, R) >droSim1.chr3R 2163487 91 + 27517382 GAUCACGCAACAAAACCACUGAUAGUUGGUUCCAGUGACCAAUUAUCAGAGAAAGAAAUAUUCCGUUCGGAAUUGCCCAUUCCCAUCAAAC----- ......((((........(((((((((((((.....)))))))))))))...........((((....))))))))...............----- ( -23.40, z-score = -3.86, R) >droSec1.super_6 2219160 82 + 4358794 GACCACGCAACAAAACCACUGAUAGUUGGAUCCAGUGACCAAUUAUCAAAGAAAGAA---------UCGGAAUUGCCCAUUCCCAUCAAAC----- ...................((((((((((.((....))))))))))))..((..(((---------(.((.....)).))))...))....----- ( -15.20, z-score = -1.95, R) >droYak2.chr3R 3716244 88 + 28832112 GGUAACGCAACGGGAAUAAUAAUCUCCAGUCCAAGUCGCAUAUCAUCAGGGAAAGGCGGAUCCGG---GGGAUCACCAGCCUUCAUCCGAC----- ((((..((.((.(((..............)))..)).)).)))).....((((((((.(((((..---.)))))....)))))..)))...----- ( -20.54, z-score = 0.35, R) >droEre2.scaffold_4770 2378668 91 + 17746568 GAUCACGUAUUAAAGCCACAGAUAGUUGGUGCUAAAAGCCAACUAUCAGAGAAUGAAAUAUUCCGGUCGGAAUUGCCCAUUCCCAUCAAAC----- (((.................((((((((((.......)))))))))).(.(((((....(((((....)))))....))))).))))....----- ( -25.10, z-score = -3.93, R) >droWil1.scaffold_181130 5488505 96 - 16660200 AUCCAUACACAAAAGUCUUAAAUUUGGAAAAAGAAUAAUAAAAUGUGUGGGCUAGACUUUCCCCAGAAUAUCUUCUCAAUUGUGUUCUAAUUGAUU .((((((((......((((...........)))).........))))))))..(((..(((....)))..)))..(((((((.....))))))).. ( -13.36, z-score = 0.28, R) >consensus GAUCACGCAACAAAACCACUGAUAGUUGGUUCCAGUAACCAAUUAUCAGAGAAAGAAAUAUUCCG_UCGGAAUUGCCCAUUCCCAUCAAAC_____ ..................((((((((((((.......))))))))))))...................(((((.....)))))............. ( -7.03 = -8.82 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:22 2011