| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,459,342 – 6,459,437 |
| Length | 95 |
| Max. P | 0.596918 |
| Location | 6,459,342 – 6,459,437 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.48114 |
| G+C content | 0.32494 |
| Mean single sequence MFE | -12.83 |
| Consensus MFE | -9.58 |
| Energy contribution | -9.69 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6459342 95 - 23011544 AGGACACUGAUUUGUUAGCUCAAGACAACA---CAACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAAUUCGAGCUGGUAUCGAAUAUUAACCAUACA-------------- .((......((((((((((((..(......---)..(((((.((((......)))).))))).........)))))))...))))).....)).....-------------- ( -15.20, z-score = -0.68, R) >droSim1.chr2L 6245448 95 - 22036055 AGGACACUGAUUUGUUAGCUCAAGACAACACAACAACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAAUUCGAGCUGGUAUCGAAUAUUAAACCA----------------- .((......((((((((((((..(......).....(((((.((((......)))).))))).........)))))))...)))))......)).----------------- ( -15.60, z-score = -0.84, R) >droSec1.super_5 4508545 94 - 5866729 AGGACACUGAUUUGUUAGCUCAAGACAACACAACAACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAAUUCGAGCUGGUAUCGAAUAUUAAACU------------------ .......((((...(((((((..(......).....(((((.((((......)))).))))).........))))))).))))...........------------------ ( -13.60, z-score = -0.16, R) >droEre2.scaffold_4929 15367697 91 - 26641161 AAGACACUGAUUUGUUAGCCGAAGACAACA---CAACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAAUUCGAGCUGGUAUCGAAUAUAAACCA------------------ .......((((...(((((((((.......---...(((((.((((......)))).)))))......)))).))))).))))...........------------------ ( -13.09, z-score = -0.26, R) >droYak2.chr2L 15866120 93 + 22324452 AAGACACUGAUUUGUUAGCUCAAGACAACA---CAACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAGUUCGAGCUGGUAUCGAAUAUAAACCUUA---------------- .......((((...(((((((..(((....---...(((((.((((......)))).))))).....))).))))))).)))).............---------------- ( -13.70, z-score = 0.15, R) >droAna3.scaffold_12943 2306211 94 + 5039921 AAGAAACUAAAUUGUUUUCGUAAACACACAACACAACUGAAGUCGAAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUGAAACA------------------ ...............(((((((.........((....))...((((.((((.((((((((.....))))))))))..)).)))).)))))))..------------------ ( -13.50, z-score = -0.13, R) >dp4.chr4_group1 1509788 82 - 5278887 ----AACUAAAUUGUUAUUACA----CACA----AACUGAAAUCGUAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAUACA------------------ ----........((((((....----....----..(((((.(((........))).))))).....((((((.......))))))))))))..------------------ ( -10.50, z-score = -0.57, R) >droPer1.super_5 3115020 82 + 6813705 ----AACUAAAUUGUUAUUACA----CACA----AACUGAAAUCGUAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAUACA------------------ ----........((((((....----....----..(((((.(((........))).))))).....((((((.......))))))))))))..------------------ ( -10.50, z-score = -0.57, R) >droWil1.scaffold_181071 559961 79 - 1211509 AUGAAACUAAAUUUUUAA----------------AACUGAAGUCGAAACGUAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUGCAUAUA----------------- (((...............----------------..(((((.((((......)))).)))))..((.((((((.......)))))).)))))...----------------- ( -10.80, z-score = -0.36, R) >droVir3.scaffold_12963 15052362 86 + 20206255 AAGAAACUAAAUUUAUGA----------------AACUGAAAUCGAAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAAUUAAAAACAAU---------- .........((((((((.----------------..(((((.((((......)))).)))))......(((((.......))))))))))))).........---------- ( -12.60, z-score = -2.09, R) >droGri2.scaffold_15252 9375755 96 + 17193109 AAGAAACUAAAUUUAUGA----------------AUCUGAAAUGGAAACGCGUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUACAUAUAAAAAAAAAACACAAACAUU ..((.((((.........----------------.........(....)((.((((((((.....)))))))))))))).)).............................. ( -12.00, z-score = -1.05, R) >consensus AAGAAACUAAAUUGUUAGCUCAA___AACA___CAACUGAAAUCGAAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAAACA__________________ ..........................................((((.((((.((((((((.....))))))))))..)).))))............................ ( -9.58 = -9.69 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:21 2011