| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,105,143 – 2,105,245 |
| Length | 102 |
| Max. P | 0.547512 |
| Location | 2,105,143 – 2,105,245 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.18 |
| Shannon entropy | 0.58334 |
| G+C content | 0.37812 |
| Mean single sequence MFE | -20.44 |
| Consensus MFE | -8.24 |
| Energy contribution | -8.84 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2105143 102 + 27905053 ACGUUGUUGACUUAUUUUCUUCAAUUAGUAUCGCAAGAAUGUUAUUUUACCCUACUGGCUAAAUAGCCAGUGAUUACAUCAGAUCUCUUGCCUGCAAUUAAC------------------ ..(((((.((((.(((......))).)))...((((((...............(((((((....)))))))((((......))))))))))).)))))....------------------ ( -21.70, z-score = -2.33, R) >droEre2.scaffold_4770 2348498 116 + 17746568 CCGUU-UUUGAUUAUUUUCCCCAACUGGUAUCGCA-GUAUAUUAUUU-ACCCUAAUGGCCAAAUAGCCAGUGAUUAUGGUAGAUCUCC-GGCCUCUGUCGCCGAAUACCCUGCAAUCAGC .....-.((((((.......((....))....(((-(..((((((((-(((.(((((((......))))....))).)))))))...(-(((.......))))))))..)))))))))). ( -27.90, z-score = -1.80, R) >droYak2.chr3R 18031164 87 + 28832112 -----------ACAUUUUUUGUUUUUUUUA-CACAAGUAUUUUAUUUUACCCUACUGGCUUAAUAGGCAGUGAUUACAUUACAUUACCGUACAAUUAAC--------------------- -----------.........(((..((.((-(....(((........)))..(((((.((....)).)))))................))).))..)))--------------------- ( -9.60, z-score = -0.66, R) >droSec1.super_6 2190996 120 + 4358794 ACGUUGUUUGCUUAUUUUCUCCAAUUAGUAUCGCAAGUAUGUUAUUUUACCCUACUGGCUAAAUAGCCAGUGAUUACAUCAGAUCUCCUGGCCUCUGUCCCCGAAUUGCCUGCAAUUAAC ..((((.((((.....(((........(((.(....)...............((((((((....))))))))..))).((((.....))))...........)))......)))).)))) ( -21.70, z-score = -0.91, R) >droSim1.chr3R 2119126 116 + 27517382 ACGUUGUUU----AUUUUCUCCAAUUAGUAUCGCAAGUAUGUUAUUUUACCCUACUGGCUAAAUAGCCAGUGAUAACAUCAGAUCUCCUGGCCUCUGUCCCCGAAUUGCCUGCAAUUAAC .........----...................(((.((((((((((.......(((((((....))))))))))))))((((.....))))...............))).)))....... ( -21.31, z-score = -1.31, R) >consensus ACGUUGUUU__UUAUUUUCUCCAAUUAGUAUCGCAAGUAUGUUAUUUUACCCUACUGGCUAAAUAGCCAGUGAUUACAUCAGAUCUCCUGGCCUCUGUCCCCGAAU__CCUGCAAU_A_C ....................................................((((((((....))))))))................................................ ( -8.24 = -8.84 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:17 2011