| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,103,053 – 2,103,147 |
| Length | 94 |
| Max. P | 0.582653 |
| Location | 2,103,053 – 2,103,147 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 65.95 |
| Shannon entropy | 0.60615 |
| G+C content | 0.44098 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -10.91 |
| Energy contribution | -12.15 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2103053 94 - 27905053 AUGCAAUUGGCGUAGGGAAAGGAAA------GUUGUGCCGUAUAAUUGUGGCUUUUUUUGCGGCUUGAUUGUUGCUAUGAAAACAAAACUUUUAGUCCAA ((((.....))))..(((...((((------(((..((((((....))))))(((((..(((((......)))))...)))))...)))))))..))).. ( -23.70, z-score = -1.00, R) >droSim1.chr3R 2117094 100 - 27517382 AUGCGAUUGGCGUAGGGAAAGGAAAGCUAAAGCUGUGCUGCAUAAUUGUGGCUUUUUUUGCGGCUUGACUGCUGCUAUGAAAACAAAACCUUUUAGCCAA ......(((((.....((((((..(((....)))..((..((....))..))(((((..(((((......)))))...))))).....)))))).))))) ( -30.20, z-score = -1.37, R) >droSec1.super_6 2188953 100 - 4358794 ACGCGAUUGGCGUAGGGAAAGGAAAGCUAAAGCUGUGCUGCAUAAUUGUGGCUUUUUUUGCGGCUUGACUGCUGCUAUGAAAACAAAACCUUUUAGCCAA ......(((((.....((((((..(((....)))..((..((....))..))(((((..(((((......)))))...))))).....)))))).))))) ( -30.20, z-score = -1.24, R) >droEre2.scaffold_4770 2346567 93 - 17746568 AUGCGAUUGGCGUAGGGAAAGGAAA------GCUUUUCCGCAUUAUUGCGGC-UUUCUUGCGGCUUGACUGCUGCUAUAAAGACAAAACUUUUUAGCCAA ......(((((....((((((((((------((.....((((....))))))-))))..(((((......))))).............)))))).))))) ( -29.00, z-score = -1.57, R) >droWil1.scaffold_181130 5453409 73 + 16660200 ---AAGCAGGCAAAAGGAAUGGAAA------GC--UGCUGCAUUAUUGUGG--UUACU----------CUGC----GGGAGCCACAUACUUUUCAUUCGA ---.............(((((((((------((--....)).....(((((--((.((----------....----.)))))))))...))))))))).. ( -20.20, z-score = -1.03, R) >droVir3.scaffold_12822 2335278 78 + 4096053 ---AGACAGGCAGCCGAAA-GGAAA------GC--UGCCGCAUAAUUGUGGCUUUGCC----------UUGUCGUGGCAAGCAAAAAACUUUUCCCCCAA ---.(((((((((((....-))...------..--.((((((....)))))).)))))----------.))))........................... ( -25.50, z-score = -1.44, R) >consensus AUGCGAUUGGCGUAGGGAAAGGAAA______GCUGUGCCGCAUAAUUGUGGCUUUUCUUGCGGCUUGACUGCUGCUAUGAAAACAAAACUUUUUAGCCAA ........((......((((((..............((((((....)))))).......(((((......))))).............))))))..)).. (-10.91 = -12.15 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:16 2011