| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,099,224 – 2,099,355 |
| Length | 131 |
| Max. P | 0.506080 |
| Location | 2,099,224 – 2,099,355 |
|---|---|
| Length | 131 |
| Sequences | 7 |
| Columns | 146 |
| Reading direction | reverse |
| Mean pairwise identity | 62.59 |
| Shannon entropy | 0.71608 |
| G+C content | 0.44446 |
| Mean single sequence MFE | -25.25 |
| Consensus MFE | -10.12 |
| Energy contribution | -9.09 |
| Covariance contribution | -1.03 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2099224 131 - 27905053 UCUAUAAUAAAAUAAAAACGCCAG-C-------CGAGACGCAGCCUUCCCAAGCUGCAAAUCGCAGAUACAAGCGGCGGGCAUACUAUAC-------UACAUCUCGAUCUCACUCGACAUGUUUACAUGCACCAAACUGUGCAGUG ...................(((.(-(-------(((...(((((........)))))...))((........))))).))).........-------.((((.((((......)))).)))).(((.(((((......)))))))) ( -34.90, z-score = -3.02, R) >droSim1.chr3R 2113259 115 - 27517382 UCUAUAAUAAAAUAAAAGCGCCAGCC-------CCAGACACAGCCUUCCCAAGCUGCAAAUCGCAGAUAC-----------------UAC-------UACAUCUCGAUCUCACCCGACAUGUUUACAUGCACCAAACUGUGCAGUG .................((....)).-------..(((((((((........))))...((((.((((..-----------------...-------...))))))))...........)))))((.(((((......))))))). ( -18.10, z-score = -1.15, R) >droSec1.super_6 2185278 114 - 4358794 UCUAUAAUAAAAUAAAAGCGCCAGCC-------CCAGACACAGCCUUCCC-AGCUGCAAAUCGCAGAUAC-----------------UAC-------UACAUCUCUAUCUCACCAGACAUGUUUACAUGCACCAAACUGUGCAGUG .................((....)).-------.....(((.........-..((((.....))))....-----------------...-------.((((.(((........))).)))).....(((((......)))))))) ( -16.00, z-score = -0.20, R) >droYak2.chr3R 18025611 112 - 28832112 ------------------------------UAAUAAAAUACAGCCUUCCCAAGCUGCAAGUCUCAGAUACAAGCGGUGGGCUUUAAAUAU----AUACAUAUCUCGAUCUCACUCGACAUGCUUACAUGCACCAAACUGUGCAGUG ------------------------------........((.(((((.((...(((....(((...)))...))))).))))).)).....----.....(((.((((......)))).)))..(((.(((((......)))))))) ( -19.90, z-score = 0.09, R) >droEre2.scaffold_4770 2342338 141 - 17746568 ----UAAUAAAAU-AAAGCGCCAGCCCAGACAUCCAGACAUAGCCUUCCCAAGCUGCAAAUCGCAGAUACAAGCGGCGGGCAUACUGUACUCGUAUAUGUAUCUCGAUCUCACCCGACAUGUUUACAUGCACCAAACUGUGCAGUG ----.........-.........((((.(.....).......(((........((((.....))))........))))))).((((((((..((.((((((..(((........)))......)))))).))......)))))))) ( -30.49, z-score = -0.22, R) >droAna3.scaffold_13340 5636756 131 + 23697760 GGGGGAGGCAAGAAGAAACCCGAAUC-------UCAAGCACUACCAUGCCAUGAUGGAAAUUGCAGAUACAAGAUACAAGCGGCAGGCA--------UAUAUCUCGAUCUCAUUCGACAUGUUUGCAUGCACCGGUCUGUGCAGUG .(((..............))).....-------....((((.(((.(((...(((....))))))..............(..(((.(((--------.((((.((((......)))).)))).))).)))..))))..)))).... ( -31.94, z-score = 0.83, R) >droWil1.scaffold_181130 5449800 113 + 16660200 --------CAAACAAGAAAAAGAA---------AAAUUCAUCGUCUCUGCCUAUUGGCAGUUG--GCUAAAAGUUAUCUGAAA--------------GAUAUCUUGAUCUCACUUGGCAUAUUUACAUGCACCAAAAUGUGCAAUG --------....((((........---------.........(((.(((((....)))))..)--))...(((.((((.....--------------)))).))).......))))((((((((..........)))))))).... ( -25.40, z-score = -2.04, R) >consensus ____UAAUAAAAUAAAAACGCCAG_C_______CCAGACACAGCCUUCCCAAGCUGCAAAUCGCAGAUACAAGCGGCGGGCAU____UAC_______UAUAUCUCGAUCUCACUCGACAUGUUUACAUGCACCAAACUGUGCAGUG ........................................((((........))))..........................................((((.(((........))).)))).....(((((......)))))... (-10.12 = -9.09 + -1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:15 2011