| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,088,321 – 2,088,372 |
| Length | 51 |
| Max. P | 0.931597 |
| Location | 2,088,321 – 2,088,372 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 79.86 |
| Shannon entropy | 0.32088 |
| G+C content | 0.54802 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.54 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2088321 51 - 27905053 ----------AAAAGACGUACGAGGCGGC-GGCCUGGCCUUUUGGCCAUUUUGAGCCUUGGG ----------..........((((((..(-((..(((((....)))))..))).)))))).. ( -21.10, z-score = -1.98, R) >droEre2.scaffold_4770 2330950 61 - 17746568 GAAAAAAUAAAAAAGACAUACGACGCGCC-GGGCAGGCCUUUUGGCCAUUUUGAGCUUUGGG ....................(((.((..(-(((..((((....))))..)))).)).))).. ( -12.70, z-score = 0.09, R) >droYak2.chr3R 18014585 56 - 28832112 ------AAAAAAGCGCCAUACAAUGCGCCGGGGCAAGCCUUUUGGCCAUUUUGAGCUUUGAG ------...(((((..((...((((.(((((((....)))..)))))))).)).)))))... ( -16.00, z-score = -0.40, R) >droSec1.super_6 2174180 51 - 4358794 ----------AAAAGACGUACGAGGCGGC-GGCCUGGCCUUUUGGCCAUUUUGAGCCUUGGG ----------..........((((((..(-((..(((((....)))))..))).)))))).. ( -21.10, z-score = -1.98, R) >droSim1.chr3R 2101979 51 - 27517382 ----------AAAAGACGUACGAGGCGGC-GGCCUGGCCUUUUGGCCAUUUUGAGCCUUGGG ----------..........((((((..(-((..(((((....)))))..))).)))))).. ( -21.10, z-score = -1.98, R) >consensus __________AAAAGACGUACGAGGCGGC_GGCCUGGCCUUUUGGCCAUUUUGAGCCUUGGG ....................((((((((....)).((((....)))).......)))))).. (-17.58 = -17.54 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:13 2011