| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,061,756 – 2,061,899 |
| Length | 143 |
| Max. P | 0.958315 |
| Location | 2,061,756 – 2,061,899 |
|---|---|
| Length | 143 |
| Sequences | 7 |
| Columns | 143 |
| Reading direction | forward |
| Mean pairwise identity | 69.98 |
| Shannon entropy | 0.60787 |
| G+C content | 0.68645 |
| Mean single sequence MFE | -66.96 |
| Consensus MFE | -38.36 |
| Energy contribution | -42.00 |
| Covariance contribution | 3.64 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958315 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 2061756 143 + 27905053 UCUGGCUGCUGGUGCUUCCAGCGGACUGGGACGCAUCGGUGGAUCCGGAGGCGGCGGCGGUCUGCUCGGCGGUCUGGGAGGUCUCUUCGGCGGCAAGAACGCCGGUGGAUCGUCGGCUGCCAGCACCGGUGGAUGGUCCUCGG ((((((..(((((((((((((....)))))).)))))))..)..)))))(((((((((((((..(.(((((.(((.....(((.(....).))).))).))))))..))))))).))))))....((((.((.....)))))) ( -78.20, z-score = -2.77, R) >droSim1.chr3R 2078715 143 + 27517382 UCUGGCUGCUGGUGCUUCCAGCGGACUGGGACGCAUCGGUGGAUCCGGAGGCGGCGGCGGUCUGCUCGGCGGUCUGGGAGGUCUCUUCGGCGGCAAGAACGCCGGUGGAUCGUCGGCUGCCAGCACCGGUGGAUGGUCCUCGG ((((((..(((((((((((((....)))))).)))))))..)..)))))(((((((((((((..(.(((((.(((.....(((.(....).))).))).))))))..))))))).))))))....((((.((.....)))))) ( -78.20, z-score = -2.77, R) >droSec1.super_6 2148719 143 + 4358794 UCUGGCUGCUGGUGCUUCCAGCGGACUGGGACGCAUCGGUGGAUCCGGAGGCGGCGGCGGUCUGCUCGGCGGUCUGGGAGGUCUCUUCGGCGGCAAGAACGCCGGUGGAUCAUCGGCUGCCAGCACCGGUGGAUGGUCCUCGG ((((((..(((((((((((((....)))))).)))))))..)..)))))(((((((..((((..(.(((((.(((.....(((.(....).))).))).))))))..))))..).))))))....((((.((.....)))))) ( -72.40, z-score = -1.51, R) >droYak2.chr3R 17988243 143 + 28832112 UCUGGCUGCUGGUGCCUCCAGCGGACUGGGACGCAUUGGUGGAUCCGGAGGCGGCGGCGGUCUGCUCGGCGGUCUGGGUGGUCUUUUCGGUGGCAAGAACGCCGGUGGAUCGUCGGCUGCCAGCACCGGUGGAUGGUCCUCGG ...((((((((.(((((((.(((........)))...((.....))))))))).))))))))((((.(((((((..(..(((((..((((((.......)))))).)))))..))))))))))))((((.((.....)))))) ( -73.20, z-score = -1.97, R) >droEre2.scaffold_4770 2303970 143 + 17746568 UCUGGCAGCUGGUGCCUCCAGCGGACUGGGACGCAUCGGUGGAUCCGGAGGCGGCGGCGGUCUGCUCGGCGGUCUGGGAGGUCUUUUCGGUGGCAAGAACGCUGGUGGCUCGUCGGCUGCCAGCACCGGUGGAUGGUCCUCGG .(((((((((((.(((.((((((..((..(.(.((((((.((((((..((((.((.(.((....))).)).))))..).)))))..)))))))).))..)))))).)))...)))))))))))..((((.((.....)))))) ( -68.60, z-score = -0.48, R) >anoGam1.chr2R 39729220 119 + 62725911 ---GAUGGCUGCCGUGCUCGCCGCCCAGAAGUUCCUCGGCGG---------UGGCGGUGGAUCGCCCCUGAACCUG------CUGUCC------AAGGUUGCCGGUGGAUCGUCCGGUGCCGUCGUCGGUGGCGGUGCCUCGG ---........(((.((((((((((..((......))((((.---------.((((.(((((..((((.((((((.------......------.))))).).)).))...))))).))))..)))))))))))).))..))) ( -54.60, z-score = -0.45, R) >apiMel3.Group15 2410442 130 - 7856270 ----GCCAUUUCCGCUUUCUUCGGCCUGAGGGCGCUC--UGGUCCAAGAAUUCCCACGACAUCACCCCGUACAACGG-------UUGGGCAAGCGGCAACAACGGUUGGGCAGCCACCCCCGUAGCGAGCGGAUGGUCCUCGG ----((((..(((((((((((.((((.(((....)))--.)))).))))...((((.(....)...(((.....)))-------.))))...(((....).((((..(((......))))))).)))))))))))))...... ( -43.50, z-score = 0.98, R) >consensus UCUGGCUGCUGGUGCUUCCAGCGGACUGGGACGCAUCGGUGGAUCCGGAGGCGGCGGCGGUCUGCUCGGCGGUCUGGGAGGUCUCUUCGGCGGCAAGAACGCCGGUGGAUCGUCGGCUGCCAGCACCGGUGGAUGGUCCUCGG (((((((((((((((.(((((....)))).).))))))))))..)))))(((((((((((.((((.(((((.(((.....(((........))).))).))))))))).))))).))))))....((((.(((...))))))) (-38.36 = -42.00 + 3.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:12 2011