| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,053,092 – 2,053,186 |
| Length | 94 |
| Max. P | 0.752633 |
| Location | 2,053,092 – 2,053,186 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.25 |
| Shannon entropy | 0.56265 |
| G+C content | 0.54584 |
| Mean single sequence MFE | -30.09 |
| Consensus MFE | -17.41 |
| Energy contribution | -17.28 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2053092 94 - 27905053 CGGCCGUUGCAAUUUU-----UCCAAUUUUCAACGGUCAGUUGGUC-GGACAGCCGUGGGAUGCGCUUGGCUGCC-------GCCCGUUCCACCAACA---ACUUGGCCU--- .((((((((.((....-----......)).))))(((....(((.(-((.((((((((.....)))..)))))))-------).)))....)))....---....)))).--- ( -32.10, z-score = -0.61, R) >droSim1.chr3R 2069552 94 - 27517382 UGGCCGUUGCAAUUUU-----UCCAAUUUUCAACGGUCAGUUGGUC-GGACAGCCGUGGGAUGCGCUUGGCUGCC-------GCCCGUUCCACCAACA---ACUUGGCCU--- (((((((((.((....-----......)).)))))))))(((((((-((.((((((((.....)))..)))))))-------)........)))))).---.........--- ( -32.20, z-score = -0.63, R) >droSec1.super_6 2139662 94 - 4358794 UGGCGGUUGCAAUUUU-----UCCAAUUUUCAACGGUCAGUUGGUC-GGACAGCCGUGGGAUGCGCUUGGCUACC-------GCCCGUUCCACCAACA---ACUUGGCCU--- .((((((((.......-----(((.....(((((.....)))))..-))))))))((((((((.....(((....-------))))))))))).....---.....))).--- ( -28.51, z-score = 0.25, R) >droEre2.scaffold_4770 2294834 94 - 17746568 UGGCCGUUGCGAUUUU-----UCCAAUUUUCAACGGUCAGUUGGUC-GGACAGCCGUGGGAUGCGCUUGGCUGCC-------GCCCGUUCCACCAACA---ACCUGCCCU--- (((((((((.((....-----......)).)))))))))(((((((-((.((((((((.....)))..)))))))-------)........)))))).---.........--- ( -32.60, z-score = -0.80, R) >droYak2.chr3R 17979411 94 - 28832112 UGGCCGUUGCAAUUUU-----UCCAAUUUUCAACGGUCAGUUGGUC-GGACAGCCGUGGGAUGCGCUUGGCUGCC-------GCCCGUUCCACCAACA---ACUUGCCCU--- (((((((((.((....-----......)).)))))))))(((((((-((.((((((((.....)))..)))))))-------)........)))))).---.........--- ( -32.20, z-score = -1.00, R) >droAna3.scaffold_13340 5591405 105 + 23697760 UGGCCGUUGCUAUUUU-----UCCAAUUUUCAACGGUCAGUUGGCCGGGACAGCCUUGGGAUUUGGUUGGCUGCCUUCCUAUUCCCAUUCCUCCGUCAAGCACUUGGCAU--- ..((((.((((.....-----............(((((....)))))(((......(((((...((..((...))..))...)))))....)))....))))..))))..--- ( -31.50, z-score = -0.47, R) >droPer1.super_0 4637986 84 - 11822988 UGGCCGUUGCAAUUUU-------CAAUUUUCAACGGUCAGUUGGUC-GACCAGCCGUGGGAUGCGCUCGGCUGGUUCU---UUCUCUCUCUCUCU------------------ (((((((((.((....-------....)).))))))))).......-(((((((((.(.(...).).)))))))))..---..............------------------ ( -28.90, z-score = -3.05, R) >dp4.chr2 15018357 84 + 30794189 UGGCCGUUGCAAUUUU-------CAAUUUUCAACGGUCAGUUGGUC-GACCAGCCGUGGGAUGCGCUCGGCUGGUUCU---UUCUCUCUCUCUCU------------------ (((((((((.((....-------....)).))))))))).......-(((((((((.(.(...).).)))))))))..---..............------------------ ( -28.90, z-score = -3.05, R) >droWil1.scaffold_181130 5399148 95 + 16660200 UGGCCGUUGCAAUUUU-------CAAUUUUCAACGGUCAGUUGGCC-AGACAGCCGUGGGAUGCGCUUGGUUGG--------UCUCGCUCUUUUCGCUA--ACUUCCCCUCCC (((((((((.((....-------....)).)))))))))((((((.-(((.((..(((((((((.....))..)--------)))))).))))).))))--)).......... ( -27.40, z-score = -0.71, R) >droGri2.scaffold_14624 1403432 97 + 4233967 UGGCCAUUGCAAUUUUCAAUUU-CAAUUUUCAACGGUCAGUUGGUC-AGACAGUCGUGAGUUACGCUCCGCUGA--------UUUAGCUCCGAAUAUA---ACUCGUCCC--- (((((.(((.((..........-....)).))).))))).((((.(-((((((.((.(((.....)))))))).--------))).)..)))).....---.........--- ( -16.24, z-score = 0.75, R) >droMoj3.scaffold_6540 11318394 94 - 34148556 UGGCCGCUGCAAUUUU-------CAAUUUUCAACGGUCAGUUGGCC-AGCGAGCUGCGUCGUGCGUCUCGCUCU--------GCUGCGUCCGGCGGCC---ACUUCACAUGGC (((((((((.......-------.......((((.....))))(((-(((((((.(((.....)))...)))).--------)))).)).))))))))---)........... ( -34.90, z-score = -0.69, R) >droVir3.scaffold_12822 2271767 98 + 4096053 UGGCUGUUGCAAUUUUCAAUUUCCAAUUUUCAACGGUCAGUUGGCC-AGACAGCCGUGGGUUACGCUAGGCUGG--------GCUGG---CGGCGGCG---CCUUCACAUGCC .(((.(((((....................((((.....))))(((-((.((((((((.....)))..))))).--------.))))---).))))))---)).......... ( -35.60, z-score = -0.92, R) >consensus UGGCCGUUGCAAUUUU_____UCCAAUUUUCAACGGUCAGUUGGUC_GGACAGCCGUGGGAUGCGCUUGGCUGCC_______GCCCGUUCCACCAACA___ACUUGGCCU___ (((((((((.((...............)).)))))))))...........((((((((.....)))..)))))........................................ (-17.41 = -17.28 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:10 2011