| Sequence ID | dm3.chr3R |
|---|---|
| Location | 2,050,222 – 2,050,277 |
| Length | 55 |
| Max. P | 0.978281 |
| Location | 2,050,222 – 2,050,277 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 92.73 |
| Shannon entropy | 0.10018 |
| G+C content | 0.34545 |
| Mean single sequence MFE | -5.67 |
| Consensus MFE | -5.65 |
| Energy contribution | -5.43 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.91 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 2050222 55 + 27905053 ACGACAUAUCUUAUUUUCCCUGUGCAAUAAAUGCACUCUUUCAAUAAAACUUAAG ..........(((((......(((((.....)))))......)))))........ ( -6.40, z-score = -2.82, R) >droSim1.chr3R 2066100 55 + 27517382 ACGACAUCUCUCAUUUUCCCUGUGCAAAAAAUGCGCUCUUUCAAUACAACUUAAG .....................(((((.....)))))................... ( -5.30, z-score = -1.59, R) >droSec1.super_6 2136320 55 + 4358794 ACGACAUAUCUCAUUUUACCUGUGCAAAAAAUGCGCUCUUUCAAUACAACUUAAG .....................(((((.....)))))................... ( -5.30, z-score = -1.32, R) >consensus ACGACAUAUCUCAUUUUCCCUGUGCAAAAAAUGCGCUCUUUCAAUACAACUUAAG .....................(((((.....)))))................... ( -5.65 = -5.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:53:09 2011